Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1249 |
Symbol | tolB |
ID | 8132184 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1457186 |
End bp | 1458478 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644864537 |
Product | translocation protein TolB |
Protein accession | YP_003016833 |
Protein GI | 253687643 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000163249 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCATG TACTGAAAGT TGCAGTAAGC TTTTTAATGC TGTGGGCAGC GGTGCTGCAC GCGGAAGTAC GTATAGAGAT TACCCAAGGG GTAGACTCTG CGCGCCCTAT TGGTGTAGTT CCGTTCAAAT GGGCGGGGCC GGGCGCTGCG CCTGAAGACG TAGGCGGCAT CGTGGGTGCT GATTTACGTA ATAGCGGTAA ATTTAATCCG ATCGATGCAA ACCGCATGCC GCAGCAGCCT GCTACAGCAT CTGAGGTTAC CCCTGCTGCA TGGACTGCGC TGGGCATTGA TGCGGTTGTG GTTGGTCAGG TTCAACCGAG TGCCGATGGC AGCTATCTGG TTTCCTATCA GCTTGTCGAT ACCTCGGGTA ACCCAGGTAA CGTTCTGGCT CAGAACCAGT TCAAAGTCAC CAAGCAATGG TTGCGTTATG CTGCGCACAC GGCAAGTGAT GAAGTGTTTG AGAAGCTGAG CGGCATCAAA GGTGCATTCC GTACCCGTAT CGCTTACGTT GTTCAGACCA ACGGCGGTCA GTTCCCTTAT GAACTGCGCG TTGCAGACTA TGACGGTTAC AACCAGTTTG TTGTTCACCG TTCACCACAG CCGCTGATGT CTCCGGCTTG GTCTGCTGAC GGTAGCAAAC TCGCTTATGT AACGTTTGAA AGTGGCCGGT CTGCACTGGT TATCCAGACG CTGGCAAATG GTGCAATCCG TCAGGTTGCT TCCTTCCCAC GTCACAACGG TGCGCCTTCT TTCTCTCCTG ATGGCAGCAA ACTGGCATTC GCGCTCTCCA AGAGCGGTAG CCTGAACCTG TATGTAATGA ATCTGGCATC CGGGCAAATC AGTCAGGTGA CCGATGGGCG CAGCAATAAC ACGGAGCCAA CTTGGTTCCC AGACAGCCAG ACCTTGGCCT ATACTTCAGA CCAGGCTGGT CGTCCTCAGG TTTACAAAGT TAATGCTAAC GGCGGTGCAC CACAGCGTCT GACCTGGGAA GGTGCCCAGA ATCAGGATGC TGATGTGAGC GCCGACGGGA AATTTTTGGT AACGGTTGGC TCTAATGGTG GAGCTCAGCA TATTTCCAAA CTGGATCTGG TAACGGGTGC CGTACAAGTA TTAACGGACA CGTTCCTGGA CGAAACGCCA AGTATCGCAC CGAATGGCAC GATGGTGATC TACAGCTCTA AACAAGGACT GGGGTCAGTG CTACAGCTGG TTTCGACAGA TGGACGTTTC AAAGCGCGTC TTCCGGCTAC TGATGGACAG GTTAAATTCC CTGCCTGGTC GCCGTATCTA TAA
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Protein sequence | MKHVLKVAVS FLMLWAAVLH AEVRIEITQG VDSARPIGVV PFKWAGPGAA PEDVGGIVGA DLRNSGKFNP IDANRMPQQP ATASEVTPAA WTALGIDAVV VGQVQPSADG SYLVSYQLVD TSGNPGNVLA QNQFKVTKQW LRYAAHTASD EVFEKLSGIK GAFRTRIAYV VQTNGGQFPY ELRVADYDGY NQFVVHRSPQ PLMSPAWSAD GSKLAYVTFE SGRSALVIQT LANGAIRQVA SFPRHNGAPS FSPDGSKLAF ALSKSGSLNL YVMNLASGQI SQVTDGRSNN TEPTWFPDSQ TLAYTSDQAG RPQVYKVNAN GGAPQRLTWE GAQNQDADVS ADGKFLVTVG SNGGAQHISK LDLVTGAVQV LTDTFLDETP SIAPNGTMVI YSSKQGLGSV LQLVSTDGRF KARLPATDGQ VKFPAWSPYL
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