| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1240 |
|---|
| Symbol | |
|---|
| ID | 8132175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1449098 |
|---|
| End bp | 1450267 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644864528 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003016824 |
|---|
| Protein GI | 253687634 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4676] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.280897 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGGAA ATATAAAAGC GCTGATGCTG GTATTATCTG TATTTACCTG CGCTGCCAGC
GCGCAGTCTA TTAATATTGA AGTGCTGAGT GCGACGGTTA AAGATAAAAA GATTGATGAT
GCGGCGGTGA TTCTACAGAA GAACGGCGCG CAGTCAGTAA CCGCTCGCTC TGATGCCGCT
GGCCGCGTGG CGCTTAATGC ACCATTTGCG GTGGATCAAG ACAGTCTGCT GATCATTAAA
AAAGAAGGTT ATTCCGATCT GGTAGTGAAG TGTCCGTGTG ATGGAATGAC TTATGCTATT
AGTCCAGTAA TGAAAAACCT GGATGGTATG AGAATTGTAT TAACCTGGGG TGAAAGACCT
TTCGATTTAG ATTCTCATCT TATTTATCCG GATAATCATA TTTATTTCCA ACACAAGAAA
GGACGCGATG CCAATCTTGA TGTTGATGAT ACCGATAGCT TTGGGCCGGA AACCATCACC
ATTGATAAAA AGCGTTTAGG TGAAAGTTAT ATTTATGCTG TTCATGATTA TACGAACGGT
GATAAAACTA ATTCACCAGC GCTTTCCGCA AGTAGTGCAA AAGTATTTGT CTATGTAGGG
AGTTCATTAG TGCGGACGTA TTCCGTACCA CTGAATAAGA CAGGGAATAT CTGGACGGTT
TTCCGTCTTA ACCCTAACGG TGATTTTGAG GATATCAATG CCGTTGGCGA GGCCGATTTC
TCAAAAGCGA AGGATGGTAA TGCGTTGCCA ATGGTGCTTA ACCCGGCGCA AACAGCCACT
TCAGTTACCG GAAATACCGC ACTGGCAAAA ACGCTCAACC GTGACGGTGA GGCTGCCTAT
GGACGCGGTG AACTGGAACA GGCCACGGCA CTGTTCCTGG CCGCGATCGA GCAGGACAGC
GCGTTTGGTC AGGCATACAG CAACCTGGGT TTGGCTTATC AAAAGCGGGG TAACATTGCC
GAAGCTATTT GGGCTAACCG TAAAGCGATT GCGCTGGCAA ACGGTAGCAA TGCGGCCACC
ACGCGTGCCA GTTCGTACTA CAACATTGCA AAAATCTACG AGAATGCGGG TCAGTTCAGT
GATGCACTTC AGCATTATGA GCTTGCGAGA AGCCAGAAAA GTAACACGGT TTACGATAAG
GCTATTGAGC GCATGAAAGC GAAGATGTAA
|
|---|
| Protein sequence | MKGNIKALML VLSVFTCAAS AQSINIEVLS ATVKDKKIDD AAVILQKNGA QSVTARSDAA
GRVALNAPFA VDQDSLLIIK KEGYSDLVVK CPCDGMTYAI SPVMKNLDGM RIVLTWGERP
FDLDSHLIYP DNHIYFQHKK GRDANLDVDD TDSFGPETIT IDKKRLGESY IYAVHDYTNG
DKTNSPALSA SSAKVFVYVG SSLVRTYSVP LNKTGNIWTV FRLNPNGDFE DINAVGEADF
SKAKDGNALP MVLNPAQTAT SVTGNTALAK TLNRDGEAAY GRGELEQATA LFLAAIEQDS
AFGQAYSNLG LAYQKRGNIA EAIWANRKAI ALANGSNAAT TRASSYYNIA KIYENAGQFS
DALQHYELAR SQKSNTVYDK AIERMKAKM
|
|---|
| |