| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1230 |
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| Symbol | |
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| ID | 8132165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1436194 |
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| End bp | 1436985 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644864518 |
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| Product | endonuclease VIII |
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| Protein accession | YP_003016814 |
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| Protein GI | 253687624 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
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| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCGGAAG GGCCGGAAAT TCGCCGGGCG GCCGATAAGC TCGTTGAGGC CGTTGTGGGA
AAAACGCTGA CGCGTGTCTG GTTTGCGTTT CCTGAGTTGA AACCGTACGA GGCAGAATTG
GTCGGGCAGC AGGTCAGGCA GATTGCAACG CGCGGAAAAG CGCTGCTGAC CTATTTTAGC
AATGATCGTG TGCTGTATAG CCACAACCAG CTGTATGGCG TGTGGCGCGT GGTGAATGCC
GGTGAATCGC CGGAAACGAA GCGGGATTTG CGCGTTCGGC TGGAGACACA GAATCGTGCC
ATTCTGCTTT ATAGCGCATC AGATATTGAA ATGCTGACGC CGGAGGCCCT CACCACGCAT
CCTTTCCTGC AACGTATTGG TCCTGATGTC TTGGATCTTT CCCTGACACC TGAGCAGGTG
TATGAGCGTT TGCTGCTACC ACGTTTTCGT CGTCGCCAGT TTAGCGGACT GCTGTTGGAT
CAGGCTTTTC TGGCGGGGTT GGGAAATTAC CTGCGCGTCG AAATTCTCTG GCAGGCACAG
TTGGCGCCGC AACACACGGC AGCACAGCTG AATGAGGAAC AGTTGCAGAC GTTAAGTCAG
GCGCTACTGG AGATTCCCCG GCTATCCTAC AACACGCGCG GCACCGTTGA TGAGAACCAC
CATCATGGCG CAATTTTCTC GTTCAAGGTT TTCCATCGTG ATGGGGAAAG CTGTGAGCGC
TGCGGCGGAA TCATTGAAAG AACGATGCTG TCATCACGCC CATTCTATTG GTGCCCGCAC
TGCCAGAGGT AA
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| Protein sequence | MPEGPEIRRA ADKLVEAVVG KTLTRVWFAF PELKPYEAEL VGQQVRQIAT RGKALLTYFS
NDRVLYSHNQ LYGVWRVVNA GESPETKRDL RVRLETQNRA ILLYSASDIE MLTPEALTTH
PFLQRIGPDV LDLSLTPEQV YERLLLPRFR RRQFSGLLLD QAFLAGLGNY LRVEILWQAQ
LAPQHTAAQL NEEQLQTLSQ ALLEIPRLSY NTRGTVDENH HHGAIFSFKV FHRDGESCER
CGGIIERTML SSRPFYWCPH CQR
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