| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1229 |
|---|
| Symbol | |
|---|
| ID | 8132164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1435496 |
|---|
| End bp | 1436143 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644864517 |
|---|
| Product | pyrrolidone-carboxylate peptidase |
|---|
| Protein accession | YP_003016813 |
|---|
| Protein GI | 253687623 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2039] Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) |
|---|
| TIGRFAM ID | [TIGR00504] pyroglutamyl-peptidase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCG TTTTGATCAC GGCGTTTGAA CCTTTTGAGG GCGAAGCGAT TAATCCCTCA
TGGGAAGCAG TAAAAGTGCT TCATCAGCGG GAAGTCGGCG GTGCACGCGT GGTCGCCTGC
CGTTTATCGT GTGTTTTTGA TTTGTCGCTG GAAGAACTTT ACCGCGCCAT AGCGGAATGG
CAGCCGGAAG TGGTGATCGC GGTGGGGCAG GCGGGCGGTC GTACTGATAT TTCTGTCGAA
CGTGTGGCGA TTAATATTAA TGATGCCCGC ATTGCCGATA ACCGAGGCAA CCAGCCGATT
GATACGCCCA TCGTCGAAAA GGGACCCGCA GCCTATTTCT CGACATTACC GGTGAAAGCG
CTGGTGCAGG CGTTACGTGT GGCGGGGATT CCTGCCTCGG TGTCGCAAAC CGCGGGGACG
TTTGTCTGCA ACCATGTGAT GTACGGGCTT TTACATCAGT TACATCAACA GGGTGATGTG
GTGCGCGGCG GGTTCGTTCA CATTCCCTAT TCGCCGGAAC AGGCTGCGCG ACATCCCGGT
GAGCCGAGCA TGCCCACGCC GCTAGTGACG GCAGCGCTGG AAGTTATGAT CAAGCAGTCG
CTAGCGCAGC AGGTTGATGT GGCGGTGACG GGTGGTGCCC TGCATTAG
|
|---|
| Protein sequence | MKTVLITAFE PFEGEAINPS WEAVKVLHQR EVGGARVVAC RLSCVFDLSL EELYRAIAEW
QPEVVIAVGQ AGGRTDISVE RVAININDAR IADNRGNQPI DTPIVEKGPA AYFSTLPVKA
LVQALRVAGI PASVSQTAGT FVCNHVMYGL LHQLHQQGDV VRGGFVHIPY SPEQAARHPG
EPSMPTPLVT AALEVMIKQS LAQQVDVAVT GGALH
|
|---|
| |