Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1214 |
Symbol | |
ID | 8132149 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1417001 |
End bp | 1417681 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644864502 |
Product | DNA-binding transcriptional activator KdpE |
Protein accession | YP_003016798 |
Protein GI | 253687608 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00514307 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCAGGCCA CTATTCTGAT CGTTGAAGAT GAAAAAGAGA TCCGTCGTTT CGTGCGTCAG GCGCTGGAAG GCGAAGGCTG TCGCGTGTTT GACGCAGAAA CAATGCAGCG CGGCTTGCTG GAAGCGGCCA CGCGCAAACC CGATCTGATT ATTCTCGATT TAGGCCTGCC GGACGGCGAC GGTATCGACT ACATCCGCGA TTTACGTCAG TGGAGCAGCC TGCCCGTGAT TGTGCTTTCC GCCCGTACCG ACGAGCAGGA TAAAATAGAC GCGCTGGATG CGGGTGCCGA TGATTATCTG ACCAAACCGT TCGGCATCGG CGAGTTGCTG GCGCGATTGC GCGTCGCGCT GCGTCGCCAC AGCCATACTC AGCAGGAAAC GCCGCTGGTG AGTTTCGGTA CGATCACCGT AGATTTACTT AATCGGCAGG TGAACCGCGA CGGTCAGGAA CTGCACCTGA CGCCCATCGA ATTTCGCCTT CTGGCAACCT TGCTCGCCAG CCCCGGCAAA GTGCTGACGC AGCGCCAGCT TCTAACACAG GTCTGGGGGC CGAACGCCGT CGAGCACAGT CACTATCTGC GTATTTATAT GGGGCACCTG CGCCAGAAGC TGGAAAGCGA TCCGGCAAGA CCGCGCCATC TCTTGACGGA AACCGCTATC GGTTATCGAT TTATGCCGTA A
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Protein sequence | MQATILIVED EKEIRRFVRQ ALEGEGCRVF DAETMQRGLL EAATRKPDLI ILDLGLPDGD GIDYIRDLRQ WSSLPVIVLS ARTDEQDKID ALDAGADDYL TKPFGIGELL ARLRVALRRH SHTQQETPLV SFGTITVDLL NRQVNRDGQE LHLTPIEFRL LATLLASPGK VLTQRQLLTQ VWGPNAVEHS HYLRIYMGHL RQKLESDPAR PRHLLTETAI GYRFMP
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