| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1194 |
|---|
| Symbol | |
|---|
| ID | 8132123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1391956 |
|---|
| End bp | 1392834 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644864476 |
|---|
| Product | transporter-associated region |
|---|
| Protein accession | YP_003016778 |
|---|
| Protein GI | 253687588 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4535] Putative Mg2+ and Co2+ transporter CorC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG ACCATTCTCA AAACAGCGAT GCACCCAGTC CCAAAAAGGG CTTCTTTTCT
CTTATTCTTA ATCAGCTTTT TCACGGCGAG CCAAAAGATC GTAACGGTTT ACTCACTCTG
ATTCGCGATT CCGAACAGAA TGACCTGATC GATCCTGAAA CACGAGATAT GCTCGAAGGC
GTCATGGATA TCGCCGACCA GCGTGTACGC GACATCATGA TCCCTCGCTC GCAGATGATT
ACGCTCAAGC GCGATCAAAC GCTGGAAGAG TGTCTGGATG TGATTATCGA ATCCGCCCAC
TCCCGTTTCC CCGTCATTAG CGAAGATAAA GACCACATTG AAGGCATCCT GATGGCCAAG
GATTTGCTGC CGTTTATGCG CAGCGATTCC GAACCCTTCA GTATGGATAA AGTCCTGCGT
TCCGCTGTTG TTGTGCCGGA AAGTAAACGC GTTGATCGGA TGCTGAATGA GTTCCGCTCG
CTGCGTTATC ACATGGCGAT TGTCATCGAT GAATTTGGCG GCGTATCCGG CCTGGTCACG
ATTGAAGATA TCCTTGAGCT GATTGTCGGC GAAATTGAAG ATGAATACGA CGATGAAGAA
GACAGAGATA TTCGTCAGCT CAATCGCCAG ACTTACACCG TTCGTGCGTT AACCGATATT
GAAGATTTCA ATGAGGCCTT CGGAACACGG TTCAGCGATG ACGAAGTCGA CACCATTGGC
GGCTTGGTGA TGCAGTCTTT TGGGCACCTC CCTGCCCGAG GCGAAACCAT CGACATAGAA
GGTTACCTGT TTAAGGTTGC GATGGCGGAC AGCCGCCGTA TTATTCAGGT TCATGTCAGA
ATCCCTGATG ATGCCCCTCA ACCAAAATTG GAAGAATAA
|
|---|
| Protein sequence | MSDDHSQNSD APSPKKGFFS LILNQLFHGE PKDRNGLLTL IRDSEQNDLI DPETRDMLEG
VMDIADQRVR DIMIPRSQMI TLKRDQTLEE CLDVIIESAH SRFPVISEDK DHIEGILMAK
DLLPFMRSDS EPFSMDKVLR SAVVVPESKR VDRMLNEFRS LRYHMAIVID EFGGVSGLVT
IEDILELIVG EIEDEYDDEE DRDIRQLNRQ TYTVRALTDI EDFNEAFGTR FSDDEVDTIG
GLVMQSFGHL PARGETIDIE GYLFKVAMAD SRRIIQVHVR IPDDAPQPKL EE
|
|---|
| |