Gene PC1_1179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1179 
Symbol 
ID8132108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp1375714 
End bp1376841 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content59% 
IMG OID644864461 
Productrare lipoprotein A 
Protein accessionYP_003016763 
Protein GI253687573 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0797] Lipoproteins 
TIGRFAM ID[TIGR00413] rare lipoprotein A 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00815633 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTAAGG ATTGGCTTTG GATCGGCGTA GCAACTCTGG CGCTTGCTGC CTGTACCACC 
ACGGAACAGC GGCAGCCTGC TCCACCAGTA ACTCAGGTTT ATAGCGGCCC CGTCGAGGAA 
ATCGGCGGTG CGGAACCGCG TTACGAACCC TACAATCAGG GGACGCTGCA GGACTACAGC 
ATCAAAGGCA AGAGCTATAA AATTGTCAAA GATCCACAAA ACTTTAGTGA GACTGGCTTA 
GCCGCCTGGT ACGGCGAAGA AGCCAGCGGT AACCGCACGT CAATCGGCGA AACGTTTGAT 
CCTAACGCGA TCACCGCAGC CCACCCAACG CTGCCGCTAC CAAGCTATGT TCGCGTCACC 
AACCTGAGTA ACGGTCGCCG TCTGGTTGTG CGCGTGAATG ACCGCGGGCC GTATACGCCG 
GGCAGAATTA TCGATCTGTC GAAGGCTGCA GGCGATCGGC TGAATATCTC GAACAATACC 
AAAGTAAAAG TAGACTTCAT CAACGTCGCG CCAGATGGCA CGCTCTCCGG TCCCGGAACC 
GTGGGCACCA CCGTCGCCAA ACAAAGCTTC GCTCTGCCAG AACGCCCAAG CTTCGGTGCC 
AGCGGGCTGG GAACGCCAAT GATGGAAAGC ACATCACCAA CGCCCAACAG CGCCGTTCAC 
CCAATCAGCA ATAGCAGCCT GAGTGCCCCT ACAGAAAACA CGCAACCGCA GAGCAGCGCA 
CCATCGCACA GCGGTGGTTT TCTGGGAGCC CCTTCTGCCC TGCGCGCTGG CGTAGTTGAG 
TCCAACGTGG CGCCAACGGC AACATCGTCC CCATCTGCCG CACCACTGAA CGTCGCACCA 
GCCGCGTCAG CTGCAGCGGT TGCCGCTCCC TCGGCGGTAT CCTCCTCCGC CACGGGTCGC 
TATGTGGTAC AGGTCGGGGC GCTGAGCGAT CAGCAACGCG CGCAAACCTG GCAGCGCAGC 
CTGAGCGAAC GCTTCCGCGT AGCCGGTAAA GTCACGGCGA GCGGCGGGCT GTACCGTATC 
CAGCTAGGGC CATTCCAGAA TCGTCAGCAA GCCGCTGAAC TTCAACAACG TTTGTCAGTC 
GAAGCTCAGC AGCAGTCGTT TATTACCGCC GCACCCGGCA CCCTCTAG
 
Protein sequence
MRKDWLWIGV ATLALAACTT TEQRQPAPPV TQVYSGPVEE IGGAEPRYEP YNQGTLQDYS 
IKGKSYKIVK DPQNFSETGL AAWYGEEASG NRTSIGETFD PNAITAAHPT LPLPSYVRVT 
NLSNGRRLVV RVNDRGPYTP GRIIDLSKAA GDRLNISNNT KVKVDFINVA PDGTLSGPGT 
VGTTVAKQSF ALPERPSFGA SGLGTPMMES TSPTPNSAVH PISNSSLSAP TENTQPQSSA 
PSHSGGFLGA PSALRAGVVE SNVAPTATSS PSAAPLNVAP AASAAAVAAP SAVSSSATGR 
YVVQVGALSD QQRAQTWQRS LSERFRVAGK VTASGGLYRI QLGPFQNRQQ AAELQQRLSV 
EAQQQSFITA APGTL