Gene PC1_1169 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1169 
Symbol 
ID8132098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp1367582 
End bp1368709 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content58% 
IMG OID644864451 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_003016753 
Protein GI253687563 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.0085644 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCTTGCC CGGTCATAGA GCTCGCTCAA CAGTTAATTA AACGCCCTTC CCTCAGCCCG 
AACGACGAGG GCTGCCAGGC GCTCATGATT GAACGCCTGA CGGCGATGGG CTTTACCGTC 
GAAGCAATGG ATTTTGGCGA TACCCAAAAT TTCTGGGCAT GGCGCGGCAC AGGAAAAACC 
CTGGCCTTCG CCGGACACAC TGACGTAGTC CCCAGCGGGG ATGAGAGCCA GTGGCAGCAC 
CCGCCGTTTG AGCCGATCAT TCGCGACGGC ATGCTGTACG GTCGTGGCGC GGCGGACATG 
AAAGGTTCAC TGGCCGCGAT GGTGATTGCC GCCGAGCGCT TTGTCGCCGC CCACCCGAGT 
CATCAAGGGC GTCTTGCGTT TCTGATTACC TCGGACGAAG AAGCCAGCGC CGTTAACGGC 
ACGGTAAAAG TGGTTGAGGC GCTGATGGCA CGCAACGAGC GATTGGACTA CTGCTTGGTC 
GGCGAGCCGT CCAGTACGCA CGTCGTGGGC GATGTGGTAA AAAATGGTCG CCGTGGCTCT 
ATCACGGCTA ACCTGCGCGT ACACGGCGTA CAGGGGCACG TTGCCTACCC TCATCTGGCG 
GACAACCCTG TTCACCGAGC AGCACCAGCG CTGAACGAGC TCATCGCCAC CGAATGGGAT 
CGGGGCAACG ATTTCTTCCC ACCAACCACC ATGCAGATTG CCAATATTCA AGCAGGCACC 
GGCAGCAATA ACGTCATCCC CGGCGAACTG TTTGTGCAGT TTAATTTCCG TTTCAGCACC 
GAATTAACGG ATGTGTTAAT CCAGCAGCGC GTCGCGGAAC TGCTGGATCG CCACCAGCTC 
AATTACACCA TTGACTGGAA GCTTTCCGGC CAACCATTCC TGACCGCACG CGGCGAACTG 
GTCGATGCCG TGGTAAATGC CGTCAAGCAC TACAATGAGG TTACCCCAGA GCTACTGACG 
AATGGTGGCA CTTCCGATGG CCGCTTCATC GCACGTATGG GCGCGCAGGT GGTTGAACTG 
GGCCCCGTTA ATGCCACGAT CCATAAAGTG GACGAATGCG TCAGCGCCGC AGATCTGCAA 
CTGCTAAGCC GCATGTACCA GCGCATTATG GAGCAGCTCA TCGCATGA
 
Protein sequence
MSCPVIELAQ QLIKRPSLSP NDEGCQALMI ERLTAMGFTV EAMDFGDTQN FWAWRGTGKT 
LAFAGHTDVV PSGDESQWQH PPFEPIIRDG MLYGRGAADM KGSLAAMVIA AERFVAAHPS 
HQGRLAFLIT SDEEASAVNG TVKVVEALMA RNERLDYCLV GEPSSTHVVG DVVKNGRRGS 
ITANLRVHGV QGHVAYPHLA DNPVHRAAPA LNELIATEWD RGNDFFPPTT MQIANIQAGT 
GSNNVIPGEL FVQFNFRFST ELTDVLIQQR VAELLDRHQL NYTIDWKLSG QPFLTARGEL 
VDAVVNAVKH YNEVTPELLT NGGTSDGRFI ARMGAQVVEL GPVNATIHKV DECVSAADLQ 
LLSRMYQRIM EQLIA