Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1106 |
Symbol | |
ID | 8132035 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1292123 |
End bp | 1294978 |
Gene Length | 2856 bp |
Protein Length | 951 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644864388 |
Product | hybrid sensory kinase in two-component regulatory system with RcsB and YojN |
Protein accession | YP_003016690 |
Protein GI | 253687500 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.615004 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAATATC TCGCCTCATT CCATACCACG TTAAAAGTTT CCCGCTATTT GTTTCGGGTT CTGGCGATCA TGCTGTGGGT GCTGGGCGCG CTGATATCCG TTTTTTATGT CACTAAAGTA TTGAATGGAA AAGAGTCAGA ACTGCGGCAG GAGTATAACC TCAGCTTTGA TCAGTCGCAG GGCTATATTC GACACGCATC GGATATTGTG CGTGAACTCC AGTATCTGGC GGCAAATCGG CTGGTGCTGG CGCGGGAAAA AGCAGAATCG CCAATGGAAG GAGGCCCTGG AGTCTCCGTT TATTCGCTTG CGCCCGGTGC AACCTGTTCC ACGCAATATG GCGGGAATGC GGCACTGCTT TCATTAAGTC ATTTCTTTAA CGGCTGGCAG GATAATTTCT CTGCCGTCTA CGATCTTAAC CGGGTCTTTT TTGTCGGCGG CGATCGGCGC TGTATGGTTG ATTTTGGCAT CCGTAACCAG TCGCTCGACC GCGATAACTT GCTTAAAAAC GTGCAGGATC GGTTTCAGGA TCAGAAGAAG AATCGCACTC AAACCGGGCG CGATGAAACG CTCTATTGGA TTACCCCCGC GTCTATCCCC GATGTCGGCT ATTTATATGC GCTGACGCCG ATTTATGTGG ATAACAAGCT GGAAGTCATC ATGGGGATTG AACAGACGAT TCGTCTGGAT GACTTCGTCA CTATAGGTAA ATTCCCGATC GGGGCGCGGT TGCTGGATCA ATATAATCAG GTGGTTTTGC AGTTTTCCGA TGATAAAGGG CGTTACGCTT CGTCGGTAGA TGGCTATCCC TCCGATCATA ACTATTTCGG CTATGTGAAT GGTTATGATG AACTCATTTT GAAGAAGTCG CTGCCGCCGA CGTCATTCAG TATCGTGTAT TCGCTGCCGT TAAAGGTGCT GCTCTCCCAT ATCAGCGCCT TGATGATCAA TATGCTAGTG CTGAATATGC TATCGGCTAT CTTGCTGTTT GTGCTGGCGC TGGTGTTTGA GCGGAAAATG CTGTTGCCAG CGGAAGTGAA TGCGTTCCAG TTGGAAGAGA ACGAGCAATT CAACCGCAAA ATTGTGGCTT CGGCACCGGT AGGAATTTGT ATCCTGCGTA TCAATGACGG TACGAACATC CTCAGTAACG AACTGGCGCA TAACTATCTC AACCTGCTGA CCCACGAGGA CAGGCTGCGC ATTACCCGTA TCATTTGCGA GCAGCAGTCC AAGTTTGTGG ATGTCATGAC CAGCCGCAAT CATCACCTGC AAATCAGTTT TGTCCATTCG CGCTATCGCA ATGAAAACGT GGCGATTTGT GTGCTGCTGG ATGTCAGTGC GCGCGTCAAA ATGGAAGAGT CGCTACAGGA AATGGCGAAT GCCGCCGAGC AGGCAAGCCA GTCTAAATCG ATGTTCCTGG CTACCGTCAG CCATGAGTTG CGTACGCCGC TGTACGGAAT TATCGGTAAC CTCGATTTAC TGCAAACTAA ATCGCTGCCG CAGGACGCCA ACCGTCTGGT GGCGGCGATG AACAATTCCT CTTCGCTACT GCTGAAGATC ATCAGCGATA TTCTCGATTT TTCCAAGATC GAGTCGGAGC AGTTGAAGAT AGAACCTTGT GAGTTTGCGC CGCATGAGGT TATTAGCCAT ATCACCAGCA ACTATCTTCC ACTGGTGGTG AAAAAGCGCC TGACGCTGTA CTGCTTTATC GATCCAAAAG TACCGGTCAG CCTGTTTGGC GATCCTGTAC GTTTGCAGCA GGTATTGTCT AACCTGCTGA GTAATGCCAT CAAGTTTACG GACACGGGCT GCATCATTTT TGAAGTTGGC TGCCGCGATG GCTATCTGGA ATTTGTGGTG CGTGATACCG GTGTAGGGAT TCAACCCCGC GAGGCGGTGA AGCTGTTTGA TCCGTTCTTC CAAGCGGGGA GCGGCGTTCA GCGTCATTTT CAGGGGACGG GGCTAGGGCT GGCAATTTGT GAAAAGCTGG TCAATCTGAT GGATGGAGAC ATTACCATCG AGTCGGAACC GGGGCTCGGT AGCCTGTTTG GCGTCAGAAT CCCGCTGTAT AAAGCACGTT ATGCGCCTGC GGCGATCAAT GCCAGCCTGC AAGGGAAGAT GTGCTGGTTG AGAATACGTA ATGCCCGACT GGAAGCTTAT CTGCTGACGC TGTTGCAGGA TCAGGGATTG CAGGTGGCGC GCTATCAGAA TCAAACCGTG TCGCCTGATG ATGTGATGAT TAGCGATTAT GTGTCAGAAG AGGACGTCAC TGTTCGGGCA CATATTGTAA TGAGCGGCGC CCATAATGGG GCCGCGCAGG AAGTGAGTGC GGGACACTGG GTACAAGGGA CATCCACACC TCAACATCTG CCCGATTTGC TGGAGAAAAT CTATCGTTCA GAAAACGAGG ACAGAACGCA CACCGAGATT TCACCGCCGC TGGCCAGCTA TGTGCGGGAT GAGAATGGCG ACATTATGAT TCTCGTGGTT GACGATCACC CCATCAACCG CCGACTGCTG GCGGATCAGC TGGGTTCTCT GGGCTATCAG GCCATAACAG CAAATGATGG CGTCGATGCG CTGGGTGTAT TGAGCAAAAA TCATATCGAT ATCGTACTGA CGGATGTCAA TATGCCGAAT ATGGATGGTT ATCTGTTTAC ACAGCGCATG CGCGAGCAGG GATTACGCTT CCCGGTTATC GGCGTGACGG CGAATGCATT GGCAGAAGAA AGGGAACGTT GCCTCGGCGC GGGGATGGAT AACTGTTTGT CAAAACCGGT TACGCTGGAT ACCTTGCAGC AGGCGCTGGC GTATTACAGT AACGTGGTGC GTCAGGCGAG AACATCTGGG GAATAA
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Protein sequence | MKYLASFHTT LKVSRYLFRV LAIMLWVLGA LISVFYVTKV LNGKESELRQ EYNLSFDQSQ GYIRHASDIV RELQYLAANR LVLAREKAES PMEGGPGVSV YSLAPGATCS TQYGGNAALL SLSHFFNGWQ DNFSAVYDLN RVFFVGGDRR CMVDFGIRNQ SLDRDNLLKN VQDRFQDQKK NRTQTGRDET LYWITPASIP DVGYLYALTP IYVDNKLEVI MGIEQTIRLD DFVTIGKFPI GARLLDQYNQ VVLQFSDDKG RYASSVDGYP SDHNYFGYVN GYDELILKKS LPPTSFSIVY SLPLKVLLSH ISALMINMLV LNMLSAILLF VLALVFERKM LLPAEVNAFQ LEENEQFNRK IVASAPVGIC ILRINDGTNI LSNELAHNYL NLLTHEDRLR ITRIICEQQS KFVDVMTSRN HHLQISFVHS RYRNENVAIC VLLDVSARVK MEESLQEMAN AAEQASQSKS MFLATVSHEL RTPLYGIIGN LDLLQTKSLP QDANRLVAAM NNSSSLLLKI ISDILDFSKI ESEQLKIEPC EFAPHEVISH ITSNYLPLVV KKRLTLYCFI DPKVPVSLFG DPVRLQQVLS NLLSNAIKFT DTGCIIFEVG CRDGYLEFVV RDTGVGIQPR EAVKLFDPFF QAGSGVQRHF QGTGLGLAIC EKLVNLMDGD ITIESEPGLG SLFGVRIPLY KARYAPAAIN ASLQGKMCWL RIRNARLEAY LLTLLQDQGL QVARYQNQTV SPDDVMISDY VSEEDVTVRA HIVMSGAHNG AAQEVSAGHW VQGTSTPQHL PDLLEKIYRS ENEDRTHTEI SPPLASYVRD ENGDIMILVV DDHPINRRLL ADQLGSLGYQ AITANDGVDA LGVLSKNHID IVLTDVNMPN MDGYLFTQRM REQGLRFPVI GVTANALAEE RERCLGAGMD NCLSKPVTLD TLQQALAYYS NVVRQARTSG E
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