| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1092 |
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| Symbol | |
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| ID | 8132021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1274764 |
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| End bp | 1276146 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644864374 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003016676 |
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| Protein GI | 253687486 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAGTG GTCTTGCTCT GTCATTAATG GCTTCCTGCA TCACTCTGGG TATTCAAGCT
GGCACGGCAC AAGCGGCCAG CTCAGTGAAA TTCCCCGATA AAATCTGTGA CGTCACACAA
TACGGGGCCG AAGGTCACCG CCTACAGATC GCACTAAATA CCGAAGCTTT CCAGAAAGCG
ATTGATGATT GCGCTGCGGC TGGTGGCGGA ACGGTACACG TCCCTCGCGG TAACTATCTG
GTCGATCCGT TGTTCCTGAA AAGTAACATC CGACTGGATT TGGCAAAAGA TGCAACTATC
GTTGCGTCGA CCGAAATCGC GGCGTATCGC GCAACGGAAA AAACCAAATA CGCTGAAGCG
GAAAACGGCT GGCTTCCCTT TATCAGTATT GCCGACGCGC AGAACGTGGC TATCACCGGT
CAGGGCACCA TTGATGGACA GGGTGCCGTC TGGTGGGAAC GCTGGCGTGA GAATATTCGT
GCAACGGGCA AAAAAGGCGG AACCGATCGT CCGCGTCTGA TTTATATCAA AAGCTCCAGC
AACGTGCTGG TGGATGGCGT CACGCTCACG CATTCTCCAA GCTTTCACAT CGTGATGCGT
TATTCGCACG ATGTGGATGT GAACGGCACG CGCATTCTGT CGCCGTGGCA TGCGCCAAAT
ACCGATGCTA TCGACCCGAT CGACAGTCAG AATATCCGTA TCACCAACAA CTATATCGAC
TGTAATGACG ACCATATTGC GATAAAAGCC GAGAAGCCGG ATAGCCGCTT CCCGAATGGC
GTCGTGGATA ACATTTATAT TGCTAACAAC ATCCTGAAAC AGGGGCGCGG TATTTCGATC
GGCAGCGAAA CCTCTGGTGG TGTGAATAAC GTGCTGGTTG AAAACAACCA GTTTGAAGGT
TCCATGTACG GTATCCGCAT TAAAACCCTG CGTGGTAAAG GCGGCGAAGT GAAAAATATC
ACCTACCGTA ATACCAAAAT GGTGGATGTC GAAATCCCAC TCGTCTTTGC CGCTTACTAC
AAAGCCGCGC CGATAGTGCA GGCTGAAGTC GACAAGATGC TGGCTGAAGG CGGCTTCACG
ATGGGTGAGC AGATTTACCC ACCGGATACC GATCCAGCGC AGCCGTTTGA TCAATACAAA
ACGCCGCATT TCAGCAATGT GACCATTGAG AATCTGGAGT CGACCGGTAA GACCAAAGCC
GCGGCGTACA TTATCGGCGT CCCGGAAGCC CCGCTCAGCG GTTTCCACTT TGATAACGTG
CGCATTGATG CGGATAAAGG GATTCGCGTC AGGAATGCGG AACTGCAAAC CAAAGGCCTG
ACGCTGAATG TGAAAGAAGG TCCGGTGATG CAGTTGGATA AAGGGGCGAA AGTCGATCAG
TAA
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| Protein sequence | MRSGLALSLM ASCITLGIQA GTAQAASSVK FPDKICDVTQ YGAEGHRLQI ALNTEAFQKA
IDDCAAAGGG TVHVPRGNYL VDPLFLKSNI RLDLAKDATI VASTEIAAYR ATEKTKYAEA
ENGWLPFISI ADAQNVAITG QGTIDGQGAV WWERWRENIR ATGKKGGTDR PRLIYIKSSS
NVLVDGVTLT HSPSFHIVMR YSHDVDVNGT RILSPWHAPN TDAIDPIDSQ NIRITNNYID
CNDDHIAIKA EKPDSRFPNG VVDNIYIANN ILKQGRGISI GSETSGGVNN VLVENNQFEG
SMYGIRIKTL RGKGGEVKNI TYRNTKMVDV EIPLVFAAYY KAAPIVQAEV DKMLAEGGFT
MGEQIYPPDT DPAQPFDQYK TPHFSNVTIE NLESTGKTKA AAYIIGVPEA PLSGFHFDNV
RIDADKGIRV RNAELQTKGL TLNVKEGPVM QLDKGAKVDQ
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