Gene PC1_1052 details

Gene Information

• Locus tag: PC1_1052
• ID: 8131981
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 1226205
• End bp: 1228085
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 644864335
• Product: peptidyl-prolyl cis-trans isomerase (rotamase D)
• Protein accession: YP_003016637
• Protein GI: 253687447
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0760] Parvulin-like peptidyl-prolyl isomerase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGGACA ATTTACGTAC GGCCGCAAAT AACGTCGTGC TCAAAATTAT TCTTGCTTTG 
ATCATCGCAT CATTCGTTCT AACTGGCGTT GGTGATTATC TTATTGGTGG TTCAGGAGAT 
TACGCTGCAA AGGTGAACGG GCAGGAAATT ACCCGCGCAC AGCTTGAGCA GGCGGTACAG 
AACGAACGCA GTCGTCAGCA GGAAGCCTTG GGTGAGAATT TCTCTCTTCT GGCGAGCAAT 
GACGGTTACA TGCAGCAATT GCGTAGGCAG GCACTCTCCC AACTCATTGA TGAAACCTTG 
CTGGATCAGT ATGCCAACAA GCTGGGGTTA AACATCAGTG ATGAGCAAAT CAAACAGGCG 
ATCTTTGACG TTCCCGCGTT TCAGACAAAC AACCGTTTTG ATAATGAAAA GTATCTGGAT 
CAGGTTCGCC GCCTTGGCGT AACGCCGGAT ATGTATGCTC AGATGCTGCG TAAGCAACTG 
ACATCACAAC AGCTGATTCG CGGTTTTGGC AATTCATCGT TCCTGCTGCC GCAGGAGATC 
GATAATCTGG TGAAACTGGC TGCACAAGAT CGCGTTGTCC GTGTGGCAAC CATTGATATT 
GCCGCCAAAG CGAAAGCCCA GACGGTGGCT GATGATGAAG TCCAGAGCTA TTACGATCAA 
AACAAAGGCA ATTTCATCGC ACCGGAAGAA TTCAAAGTCA GCTATATCAC GTTGGATGCG 
GCGAGCATCA TGGACGGCGT GAAAGTAGAC GATGCTGCCA TCAACGATTT CTACGAGCAG 
AACAAGAACG ACTATTCCCA ACCTGAGCGC AAAAAATTCA GCGTTATTCA GGTGAAGAAT 
GAGGCCGATG CAACGTCTGT TCTGGATGCG CTGAAGCAAG GCGGTGATTT CGCTACGCTG 
GCGAAAGAAA AATCAACGGA CATCATCTCG CGCCGTAACG GTGGCGATCT GGGATGGATG 
GACGAAAACA GCATGATTGA TGAGCTGAAG CAGGCAAAAC TGACAGAGAA AGGCCAGATT 
TCCGCAGCAA TTAAATCTTC TGTTGGCTAC CTGATTGTGC GTCTTGATGA TGTTCAGCCA 
CAGCAGATTA AACCGCTGAG CGAAGTGCGT GCCGAAATCG CTGAGAAAGT GAAGCATGAG 
AAAGCGCAGG ATGGTTACTA TGCGCTGCAG CAAAAAGTCA GCGAAGCGGC CAGCAATGAC 
AACGAATCTC TGGCTTCAGC AGAAGAAGCG GCCGGTGTGA AAGCCACGCA GACCGACTGG 
TTTACGCGTG AGAAGGTTCC TGCCGCGCTG AATTTCCAAC CGGTCACGCA GGCTATCTTT 
AGTGGCGCGC TGCTGGGGGA GAACGGTACT GCAGGCAACA ACTCTGATGT GATTAACGTT 
GACGGTGACC GTGCTTTCGT TCTGCGTATC ACTGAGCACA AACCTGAAAG CACTCGCCCT 
CTGGATCAGG TTCGTACCGA GATCGTAGAG ACGTTGAAAC GTCAAAAAGC TGAACAGCAG 
GCTCGTCTGG ACGCTGAAAA AATTCTGGCT GAGCTGAAGC AAGGTAAAGA CGACGCTCTG 
AAAGCGGCAG GGTTGAGCTT TGGTGAAGCA AAAACGATGT CTTCTATCTC TCAGGGTGAT 
GCAACGGCTG AAGCTATTTT TGCTATGCCG CATCCAGAGA AGGATAAGTC GTCTTATGCG 
ATTGCTCAGG ATCAAGCGGG CAATGTCGTG TTGGTGGCGC TGGATAGCGT GACGCCACAT 
CAGCTAAACG ATGAGCAGAA AACACAGTTT GCCAGCCAGG TTCAGCAAGG TTCTCTGGGC 
GCACTGTTTG ATTCTCTGCT GTCCAGCTTG CGTAGTGAAG CGAAAATCAA GATGGGCAAT 
GCGGCGCAGG AACAGCAATA A 

 

Protein sequence

MMDNLRTAAN NVVLKIILAL IIASFVLTGV GDYLIGGSGD YAAKVNGQEI TRAQLEQAVQ 
NERSRQQEAL GENFSLLASN DGYMQQLRRQ ALSQLIDETL LDQYANKLGL NISDEQIKQA 
IFDVPAFQTN NRFDNEKYLD QVRRLGVTPD MYAQMLRKQL TSQQLIRGFG NSSFLLPQEI 
DNLVKLAAQD RVVRVATIDI AAKAKAQTVA DDEVQSYYDQ NKGNFIAPEE FKVSYITLDA 
ASIMDGVKVD DAAINDFYEQ NKNDYSQPER KKFSVIQVKN EADATSVLDA LKQGGDFATL 
AKEKSTDIIS RRNGGDLGWM DENSMIDELK QAKLTEKGQI SAAIKSSVGY LIVRLDDVQP 
QQIKPLSEVR AEIAEKVKHE KAQDGYYALQ QKVSEAASND NESLASAEEA AGVKATQTDW 
FTREKVPAAL NFQPVTQAIF SGALLGENGT AGNNSDVINV DGDRAFVLRI TEHKPESTRP 
LDQVRTEIVE TLKRQKAEQQ ARLDAEKILA ELKQGKDDAL KAAGLSFGEA KTMSSISQGD 
ATAEAIFAMP HPEKDKSSYA IAQDQAGNVV LVALDSVTPH QLNDEQKTQF ASQVQQGSLG 
ALFDSLLSSL RSEAKIKMGN AAQEQQ