Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1044 |
Symbol | ampG |
ID | 8131973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1215853 |
End bp | 1217340 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644864327 |
Product | muropeptide transporter |
Protein accession | YP_003016629 |
Protein GI | 253687439 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00901] AmpG-related permease |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0385615 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAGTC GCATCATTGC TTTATTCAGC CAACGTAATT CGCTTTTTAT GCTGTTGCTT GGCTTCGCTT CCGGTTTACC ACTGGCATTG ACATCAGGCA CATTGCAAGC CTGGATGACT GTCGAGAATG TCGATCTGAA AACCATCGGT TTTTTCTCTT TGGTTGGTCA AGCCTACGTA TTCAAGTTTC TGTGGTCCCC CCTCATGGAT CGCTATACCC CACCGTTTCT TGGCAGGCGC CGTGGCTGGC TGATTCTCAG TCAACTTCTG CTGATTGCTG CGATTATTGG TATGGGATTT ATGAACCCAG CACGCGATCT CTGGTGGCTG GCGGCGCTGG CCGTGATGGT TGCATTCTGC TCTGCTTCTC AGGATATCGT TTTTGATGCC TATAAGACGG ATTTACTTCC CCCTGAGGAA CGCGGTACGG GTGCGGCCAC CTCAGTATTA GGTTACCGTC TGGCCATGCT GGTTTCAGGC GGACTCGCTC TGTGGATGGC GGATCGCTAT CTCGGCTGGC AGGCAACGTA TTGGCTCATG GCAGGACTCA TGCTGATCGG TGTGTTCGCA ACCCTATTAG CACCGGAACC GCTAAATAGT CAGCCTGCGC CGCGCACCAT GGAGCAAGCG ATTGTTGCCC CACTGCGTGA TTTCTTCGAA CGTAACAACG CCTGGCTCAT TCTTCTGTTG ATCGTGCTAT ACAAACTCGG TGATGCCTTT GCGATTAGCT TGACGACCAC TTTCCTGATA CGCGGCGTTG GTTTCAATGC CGGTGATGTT GGGCTGGTTA ACAAGACGCT TGGACTCTTC GCCACCATCG TGGGGGCGAT TTACGGTGGA TTATTGATGC AGCGACTCTC ATTATTCAGA GCGCTGATGC TGTTTGGCAT CCTTCAGGCC GTGTCCAATG CGGGGTACTG GCTACTGGCG ATTACCGCCA AAAGCCTATT CACAATGGCT ACCGCGGTTT TTCTGGAAAA TCTCTGTGGC GGCATGGGGA CAGCAGCGTT CGTCGCGCTC TTGATGACGC TGTGTAATAA ATCATTCTCA GCCACACAGT TTGCCCTGCT TTCCGCCCTT GCAGCCGTCG GACGGGTGTA CGTCGGCCCT ATCGCAGGTT GGTTTGTCGA ATCCTACGGC TGGGCATGGT TCTATCTATT CTCGATTTTG GCTGCATTGC CGGGTCTGGC AATTCTAATG ATTTGCCGTG AGACGCTGGA ATTTACTCAG AAAACGGACA CCTTCCAGTT ACGCACACAC TTCCAGAATT ATTACAGAAA GGCCTTACAT ATACTGGGGT CAGGGGTGGT ATTACTGGCA CTGTGGCTTA TTCTGCTCAT CAGTAATGCG TTGGAATGGT CTTCATTGCC CTTACTGGCA GAATACCTGC TCATCGCAGG CGGTACGCTC GCGCTGCTGG GCATTTTCTT CGGTAGCTTG CTGGACTATC TGTCACTCAA ACGCGCGTCC AGACCGTCTG TGCACTAA
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Protein sequence | MFSRIIALFS QRNSLFMLLL GFASGLPLAL TSGTLQAWMT VENVDLKTIG FFSLVGQAYV FKFLWSPLMD RYTPPFLGRR RGWLILSQLL LIAAIIGMGF MNPARDLWWL AALAVMVAFC SASQDIVFDA YKTDLLPPEE RGTGAATSVL GYRLAMLVSG GLALWMADRY LGWQATYWLM AGLMLIGVFA TLLAPEPLNS QPAPRTMEQA IVAPLRDFFE RNNAWLILLL IVLYKLGDAF AISLTTTFLI RGVGFNAGDV GLVNKTLGLF ATIVGAIYGG LLMQRLSLFR ALMLFGILQA VSNAGYWLLA ITAKSLFTMA TAVFLENLCG GMGTAAFVAL LMTLCNKSFS ATQFALLSAL AAVGRVYVGP IAGWFVESYG WAWFYLFSIL AALPGLAILM ICRETLEFTQ KTDTFQLRTH FQNYYRKALH ILGSGVVLLA LWLILLISNA LEWSSLPLLA EYLLIAGGTL ALLGIFFGSL LDYLSLKRAS RPSVH
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