Gene PC1_1030 details

Gene Information

• Locus tag: PC1_1030
• ID: 8131959
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 1200585
• End bp: 1202450
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 644864313
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_003016615
• Protein GI: 253687425
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTTTG ATACCGCGAA GTACCCTACA TTGGCATTAG TGGAAACACC GGATGAACTT 
CGGCTGTTGC CGAAAGATAG CCTGCCGAAG CTGTGTGATG AGCTGCGCCA ATATCTGTTG 
GACAGCGTCA GCCGTTCGAG CGGCCATTTT GCTTCAGGAT TAGGGACGGT TGAATTAACG 
GTTGCGCTGC ATTATGTCTA CAACACTCCT TTCGATCATC TGGTGTGGGA TGTCGGCCAT 
CAGGCCTACC CGCATAAGAT CCTGACGGGC CGCCGCGATC GTATTTCAAC GATCCGCCAA 
AAAGGCGGTT TGCATCCCTT TCCGTGGCGT GATGAAAGCG AGTATGACGT ATTAAGCGTT 
GGGCATTCAT CTACCTCAAT CAGTGCTGGA CTGGGGATGG CTGTTGCTGC CGAGCGTGAA 
GGCAAAGGCC GTCGTACGGT TTGTGTCATT GGTGATGGCG CGATTACCGC GGGTATGGCC 
TTTGAGGCGA TGAACCACGC GGGCGACATC CGCTCCGACC TGCTGGTTGT GCTGAACGAC 
AATGAAATGT CGATATCGGA AAACGTTGGC GCATTGAACA ACCATCTGGC ACAGCTGCTA 
TCCGGCAAGC TCTACGCCAG CCTGCGTGAA GGCGGCAAGA AGGTGTTATC CGGCCTGCCA 
CCAATCAAAG AACTGGTGAA ACGCACCGAA GAACACCTTA AAGGCATGGT CGTGCCGGGT 
ACGCTATTTG AGGAGCTGGG TTTTAATTAT ATTGGCCCTG TCGACGGCCA TGACGTTCAG 
GCGCTGGCGC ACACGCTGAA AAACATGCGC AGTCTGAAAG GTCCGCAGCT TCTACATATC 
ATGACGAAAA AAGGCAAAGG CTACGCCCCT GCCGAACAAG ATCCGATCAG TTGGCACGCG 
GTGCCAAAAT TCGATCCAGC CAGCGGTACG TTGCCGAAAA GCAAGGAAGG CGCTCAACCC 
ACCTATTCAA AAATCTTCGG TCAATGGCTA CAGGAAACGG CAGCCAAAGA CAGCAAGCTC 
ATGGCGATCA CGCCAGCGAT GCGTGAAGGT TCCGGTATGG TGCAATTCTC CCGCGACTAC 
CCGCAGCAAT ATTTTGATGT GGCCATTGCC GAACAGCATG CCGTGACGTT CGCTGCCGGT 
CTGGCGGTTG GCGGCTATCA TCCGGTTGTC GCCATTTATT CGACGTTCCT GCAGCGAGCC 
TACGATCAGG TTATCCACGA TGTGGCGATC CAGAATCTCC CGGTTCTGTT TGCTATCGAT 
CGCGGCGGTA TTGTGGGTGC GGATGGGCAA ACCCATCAGG GGGCATTCGA TCTCTCTTTC 
TTACGCTGTA TTCCGAACAT GATCATCATG ACGCCCAGCG ATGAAAATGA GTGCCGCCAG 
ATGCTGCACA CGGGCTATCA CTACCAGAAA GGCCCTACGG CGGTGCGTTA CCCACGAGGA 
AACGGTACAG GTACTGAACT GACGCCACTA TCAGAACTGC CAATCGGTAA AGGCGTGGTT 
CGTCGTCAAG GCGAAACGAT CGCAATTCTG AACTTCGGTA CGCTATTGCC AGAAGCACAG 
ATTGCGGCAG AGAAGTTAAA CGCCACCCTC GTCGATATGC GTTTTGTGAA GCCACTCGAT 
GAAGCATTAC TTGAAGAACT GGCACAGTCT CACAGCACGT TTGTGACACT GGAAGAGAAT 
GCGATCATGG GCGGTGCGGG GAGCGGTGTG AATGAATTCC TGATGGCAAA ACGTCTTGCT 
GTCTCGGTGC TGAACATCGG GCTGCCGGAC GTATTCATTC CGCAAGGTTC GCAGGAAGAA 
ATCCGTGCCG ATCTGGGTTT GGATGCCGCG GGCATCGAGC GCAAAATCAC GCAGTGGATG 
GAATAA 

 

Protein sequence

MSFDTAKYPT LALVETPDEL RLLPKDSLPK LCDELRQYLL DSVSRSSGHF ASGLGTVELT 
VALHYVYNTP FDHLVWDVGH QAYPHKILTG RRDRISTIRQ KGGLHPFPWR DESEYDVLSV 
GHSSTSISAG LGMAVAAERE GKGRRTVCVI GDGAITAGMA FEAMNHAGDI RSDLLVVLND 
NEMSISENVG ALNNHLAQLL SGKLYASLRE GGKKVLSGLP PIKELVKRTE EHLKGMVVPG 
TLFEELGFNY IGPVDGHDVQ ALAHTLKNMR SLKGPQLLHI MTKKGKGYAP AEQDPISWHA 
VPKFDPASGT LPKSKEGAQP TYSKIFGQWL QETAAKDSKL MAITPAMREG SGMVQFSRDY 
PQQYFDVAIA EQHAVTFAAG LAVGGYHPVV AIYSTFLQRA YDQVIHDVAI QNLPVLFAID 
RGGIVGADGQ THQGAFDLSF LRCIPNMIIM TPSDENECRQ MLHTGYHYQK GPTAVRYPRG 
NGTGTELTPL SELPIGKGVV RRQGETIAIL NFGTLLPEAQ IAAEKLNATL VDMRFVKPLD 
EALLEELAQS HSTFVTLEEN AIMGGAGSGV NEFLMAKRLA VSVLNIGLPD VFIPQGSQEE 
IRADLGLDAA GIERKITQWM E