| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1025 |
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| Symbol | ribD |
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| ID | 8131954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1196772 |
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| End bp | 1197908 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644864308 |
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| Product | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | YP_003016610 |
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| Protein GI | 253687420 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGTTT TTCAAGAAAA CGGCCACTTG CCGCAGGATG AATTATACAT GGCGCGTGCG
TTAGAGTTGG CGCGTCGTGG CCGTTTTACG ACGGCACCCA ACCCCAATGT TGGCTGCGTG
ATCGTGCGCG ATGGCGACAT TGTCGGTGAA GGCTATCATT TCCGCGCAGG CGAACCTCAT
GCTGAGGTTC ATGCGTTGAG AATGGCAGGG GAGCGCGCAC GTGGTGCGAC GGCCTATGTC
ACGCTGGAGC CGTGCAGCCA TCATGGCCGA ACGCCGCCTT GTGCTGATGC GTTGGTTGCT
GCTGGTGTCT CCCGTGTAGT TGCCGCGATG CAGGATCCCA ATCCGCAGGT CGCGGGTCGT
GGCTTACATC GTTTGCAGCA GGCAGGGATC GCTGTCAGCC ATGGTTTCAT GATGGCTGAA
GCAGAGAAAG TCAATGTAGG TTTCCTGAAG CGCATGCGGA CAGGCTTTCC TTACGTGCAG
CTCAAAATGG CGGCATCTTT GGATGGGCGT ACTGCGATGG CCTCGGGAGA AAGTCAGTGG
ATTACCTCAC CGCAGGCGCG TCAGGATGTG CAGCGTTTTC GTGCGGAGAG CGCAGCGATT
TTGAGCAGTA GTGCGACGGT GCTGGCTGAC GATCCTTCTC TTACGGTGCG GTGGTCAGAG
CTGGGTGCCG ATGTGCAGAC TCGTTATTCA GAGGCGGATC TCAGGCAGCC CGTACGAGTG
ATTGTGGACA GCCAGCGTCG TGTCACACCG CAGCATCGGA TTGTTAGCCA ACCGGGTGAG
ACTTGGTTGG CGCGGGTGCA GGCAGACGAA CAGGCGTGGC CACAGGGCGT TGAGCAGGTC
ACCTTACCGC AGCACAATGG CGGCGTTGAT CTGGTAGCGC TGATGATGGT GCTGGGGAGA
CGGCAGATTA ACTCTGTCTG GGTTGAAGCC GGAGCCAGTC TGGCTGGTGC GCTGCTTAAT
GCGGGTGTCG TTGATGAACT TATCGTTTAT CTTGCGCCAA AACTGCTGGG TGAAAACGCC
CGTTCGCTGT GCCTCTTGCC AGGGCTGGAT CAACTGTCTC AGGCACCGGA ATTTGACATC
GCAGAGGTTC GGCAGATTGG TCCGGATTTG CGATTACGCC TGAAACCTAA ATTCTGA
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| Protein sequence | MSVFQENGHL PQDELYMARA LELARRGRFT TAPNPNVGCV IVRDGDIVGE GYHFRAGEPH
AEVHALRMAG ERARGATAYV TLEPCSHHGR TPPCADALVA AGVSRVVAAM QDPNPQVAGR
GLHRLQQAGI AVSHGFMMAE AEKVNVGFLK RMRTGFPYVQ LKMAASLDGR TAMASGESQW
ITSPQARQDV QRFRAESAAI LSSSATVLAD DPSLTVRWSE LGADVQTRYS EADLRQPVRV
IVDSQRRVTP QHRIVSQPGE TWLARVQADE QAWPQGVEQV TLPQHNGGVD LVALMMVLGR
RQINSVWVEA GASLAGALLN AGVVDELIVY LAPKLLGENA RSLCLLPGLD QLSQAPEFDI
AEVRQIGPDL RLRLKPKF
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