| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1022 |
|---|
| Symbol | secF |
|---|
| ID | 8131951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1194450 |
|---|
| End bp | 1195424 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644864305 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_003016607 |
|---|
| Protein GI | 253687417 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCACAGG AACAGGAATA CAACATTGAA CAACTAAACC ATGGGCGTAA AGTCTATGAT
TTCATGCGCT GGGACACATT GGCATTTGTC ATTTCCGGCC TGCTGATCAT TGCTTCTATC
GCGATTATGG GTGTTCGTGG TTTTAACTGG GGGCTTGACT TTACCGGTGG TACGGTCATT
GAGATTAATC TTGAGAAACC GATCGATCTC GATGTCTTGC GTAGTTCGTT AGAGACCTCT
GGGTTTTCAG AACCGCAGGT ACAGAATTTC GGTAGCAGTC GTGATGTGAT GGTACGTATG
CCACCGGTTT CTGGCAGCGA GAACGAAGCG CTCGGTAACA AAGTGCTGAA GGTGGTGAAT
GATACCTTCC AGCAGCATGC AACGGTGAAA CGTATTGAAT TCGTCGGGCC GAGCGTGGGA
AGCGATTTGG CACAGGCTGG CGCATTGGCG CTGCTGTCTG CGTTGATTGC TATCCTCATT
TATATCGGTT TCCGTTTTGA ATGGCGTCTG GCGTTGGGGT CTGTACTGGC TTTGGGGCAC
GATGTGATCA TCACGATGGG TCTGCTGTCT CTGTTCTCTA TTGAGATTGA CCTAACGATC
ATTGCGTCGC TGATGTCGGT AATTGGTTAT TCACTTAACG ATAAGATCGT TGTGTCTGAC
CGTATTCGTG AGAATTTCCG CAAGGTTCGT CGTGGGACGC CTTACGAGAT TACCAACATT
TCACTGACGC AGACGCTACA CCGTACCATT ATCACATCAG CGACCACGTT GGCGATGATC
GTGATCCTCA TGGTCTTCGG TGGCGCCTTG TTGCATGGCT TCTCGTTGAC GATGTTTATT
GGTGTGATCA TCGGTACGAT CTCTTCCATC TATGTTTCTT CTGCTCTGGC GTTGAAACTA
GGTATGAAGC GTGAAAACCT GATCGTTCAG AAAGTGGAAA AAGAAGGGGC GGACCAACCG
TCTATCCTGC CTTAA
|
|---|
| Protein sequence | MAQEQEYNIE QLNHGRKVYD FMRWDTLAFV ISGLLIIASI AIMGVRGFNW GLDFTGGTVI
EINLEKPIDL DVLRSSLETS GFSEPQVQNF GSSRDVMVRM PPVSGSENEA LGNKVLKVVN
DTFQQHATVK RIEFVGPSVG SDLAQAGALA LLSALIAILI YIGFRFEWRL ALGSVLALGH
DVIITMGLLS LFSIEIDLTI IASLMSVIGY SLNDKIVVSD RIRENFRKVR RGTPYEITNI
SLTQTLHRTI ITSATTLAMI VILMVFGGAL LHGFSLTMFI GVIIGTISSI YVSSALALKL
GMKRENLIVQ KVEKEGADQP SILP
|
|---|
| |