| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0993 |
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| Symbol | |
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| ID | 8131922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1143358 |
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| End bp | 1144785 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644864276 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_003016578 |
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| Protein GI | 253687388 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACACAC CATTTTTTAT CAGGGGCATG TTTTTTCCAC ACAATCGCGC TTTTTTGACT
CACACATTAC GCCATCACAC ACCGCGTTAT GTACTGGCCC TCGGGCTCGC CTGCAGTAGC
TTCGCAAGCC TCTACAGCCC GCCGACGCTC GCTCAGACCG TCGCGTTTGA CTGGTCCGCC
GCACCGACAG AACAGCAGGT CGATAGCCTG GATCTTAAAC AGGCCATTCT TCGCGCGTTT
GCACGCAACC CACAAATCGC ACAGGCTTCG GCACAAATTC GCGTCGGCGA CGCCGATCTC
CGGGTCGCAC AAAGCGCCTG GTTCCCACAA ATCGGCCTCA GCGGCAACGT CGGCCAGTCC
GATCAAAGCG ATACCGGCGG CACGATGAGC AACAACTCCA CCGCTGGCAT CACGCTGAAA
CAGCTGCTGT ATGATTTCGG TAAGACAGGC GGCAGCATTG ATGAGCAGCA CAGCCTGTCA
GATGCCTACC GCTATCAGCT CTACGGCGTC ATGACCACGG TAGGTCAGCA AACCTTACTG
ACCTACCTGA AAGTCAAACG CTATCAGGAA TTGGGTCAGG CAGCAGATCG TAATATCGCG
TCGCTCAGTC AGGTCAAAGA CATCGCGACG CTCCGTTCCG AGGCAGGCCT CAGTACGCAA
TCCGACATCC TGCAGGCGGA AACCCGCATC GCGGGCATGA AGGCGACGCT GGAGCAATAT
CGTGCGCTGG AGCGCTCCTC GCTGGCGCAA CTCAGCGTGT TGACTGGCGT CCTCCCCACC
ACCCTGCCCG ATCTGCCCCG CGCGCTGCTG CAACAAAAGA TTACGCTCAA GACGCTCCCT
TACCAGCAGA GTAATTCGGT ATTAAGCGCA CAGTCCAAGC AGGAGGCCTC GCGCCACCGC
ATTCGTCAGG CGGAAGCCCA GCACTGGCCT ACCATTGCCG TGCAGGCAGG CCGTACCCGC
TATGAAACCA ACCGGCGTAA TTACTGGGAT GACCAGCTAC AGCTGGTTGT AGAAGCCCCG
CTGTATCAGG GCGGTGCCGT CAGCGCACGC GTTGATGCCG CATCAGGCAC GCGCGAAGCC
GCACAGGCTG AAGTCGAAGC GGCAAAGCTG GATATGAACC AGAAAGCCTC AACGGCCTAT
GCCGACCTCA TCGGCGCGCA GCAGCGTGAA AAAGCCAGCC AGCAACAAAT CACCAGCGCA
ACCTACACCC GCAACGTTTA TCAGGATGAA TACAAACTCA GCAAACGCAG CCTGAATGAC
CTGCTCAGCG TTGAACAAGA CGTATTACAG GCCGAAACCT CACGCATCGG CGCGCTATAC
GACGGCTGGG AGGCAGCGGT TAACTATGCC GCGGCCGTCG ATAATCTGCT GGATATGCTG
GGTATTGAGC GTCATCAAGC CACTGGCGAG ACGTTACCGT CGCTGTAA
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| Protein sequence | MHTPFFIRGM FFPHNRAFLT HTLRHHTPRY VLALGLACSS FASLYSPPTL AQTVAFDWSA
APTEQQVDSL DLKQAILRAF ARNPQIAQAS AQIRVGDADL RVAQSAWFPQ IGLSGNVGQS
DQSDTGGTMS NNSTAGITLK QLLYDFGKTG GSIDEQHSLS DAYRYQLYGV MTTVGQQTLL
TYLKVKRYQE LGQAADRNIA SLSQVKDIAT LRSEAGLSTQ SDILQAETRI AGMKATLEQY
RALERSSLAQ LSVLTGVLPT TLPDLPRALL QQKITLKTLP YQQSNSVLSA QSKQEASRHR
IRQAEAQHWP TIAVQAGRTR YETNRRNYWD DQLQLVVEAP LYQGGAVSAR VDAASGTREA
AQAEVEAAKL DMNQKASTAY ADLIGAQQRE KASQQQITSA TYTRNVYQDE YKLSKRSLND
LLSVEQDVLQ AETSRIGALY DGWEAAVNYA AAVDNLLDML GIERHQATGE TLPSL
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