| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0992 |
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| Symbol | |
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| ID | 8131921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1141180 |
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| End bp | 1143318 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644864275 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_003016577 |
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| Protein GI | 253687387 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACACG TAACCCAAAC TGAAATCTGG ATTGCCGCCA TGGCCCGCGC CGCCGCCCAC
TATGGACAGG TGGTCGATAT CCAGTCGGTA CGCCAGCAGA TGCGCTGGTA CGAACAGCAG
CCCATTGCCC GCCAGCTAGA ACAAATCAGC CATCTGATGG GATTAAGTAT CAGCCTGCGA
CACACGGAGA AGCTCCGCTG GCGCAACAAG ATCTTGCCCG TGCTGGCAGA AACTGACGAC
GGCGGCGTCA TCGTCATTGA GTCGTTAAAT GATGAGGGCA TCGCCACCTA CTGGCTGAAT
GACGGGGGCG ACCTTCAACG TGAAGCCGAA CTGACGGAAC TCATCAAACA CAGTCAGGGG
ATTATCGTGC TGGTCGGCAT CGCCGAGCGT GGCCGCGATA CCCGCATCGA TGATTTCGTC
AAACCGTATC GCAAGCACTG GTTCTGGCAA CATTTTCGCG GTGCAAAACG GCAGATCGGG
GAAATTTCTC TCGCGTCTAT CGTAGGTAAC GTTCTGGCAC TGGCGGGGAT TCTGTTCTCC
ATGCAGGTGT ATGACCGGGT GATCCCAGCG CAGTCGATTC CCACCCTGTG GGTGCTGTTT
TTCGGCGTGC TGCTGGCTGC CGCATTAGAG TACGCCATCC GTTTATCACG CACCGTCGTC
TCCGATCTGA TGGGCAAAAG CATCGATCTG CACGTATCGG GGATGCTGTT CGCCCGCGCA
TTGGCGATCA AAAATGAGGC CAGACCGAAA TCCACCGGCT CGTTTATTTC ACAGCTGCGG
GAAATCGATC AGGTACGTGA ACTGCTGACG TCCACCACCG TCGGGGCAGC CGCCGATATG
CCGTTCGTCT TTTTATTTCT CGGCATCATG GCGATGATCG GCGGGCCACT GGTACTGATC
CCCATGCTGG CGATCCCGCT GATTGTGATC CCCGGCCTAA TGCTGCAATG GCCGATGGCG
AAGCTCGCCA AGGAAGGGAT GCGCGAAAGT GCGTTGCGGA ATGCGGTGCT GGTCGAGTCC
ATCGAAGGGA TCGAAGATAT CAAAGCGTTA CAGGCCGAAC CCTACTTTCA GCGCCAGTGG
GAGCAGACGC ACGAAGTCAG CGCCGCCATC GGGATGAAAC AGCGCGTCTG GGGCGCACGG
CTCAGCGGTT GGGCGTCGAC CGTCCAACAG CTCACCTATG CCGGCATGCT GGTGTTCGGC
AGCTATCTGG TGCTGGCGGG CGATATCACC ACCGGTACGC TTGTGGCCTG TAGTCTACTT
TCCTCGCGCA CCATCGCGCC ACTCATGCAG CTAACGATGG TGTTTTCCCG CTGGCAGCAC
GCCAAAACCG CCATGACCGG GCTGGATGAC ATTCTGCAAA AACCGCTGGA TCGGCCGGAA
GAGGGCAAAA TGGCGCACTG CCCGATCCTT CAGGGCCACT TCCAGCTCCA CAACGTGCAA
TACAGCTACG ATCCTGAACA GGGCGATACC GCCTTGCAGG TCGGCAAGCT GGAGATCAAA
CCGGGCGAAA AAGTGGCGCT GCTCGGTAAG GTTGGCGCGG GTAAATCCAC CCTGCTCAAG
CTGCTTGCCA ATCAGGCGAC CGCGACGCGC GGCAAAGTCA TCATTGATGG TGTCGACATC
AGTCAGATCG ATCCGGCGGA TGTCCGCCGC CAGTTAGGTT TTCTGTCTCA GGAATCACGC
CTGTTTTTCG GCAGCCTGCG GCAAAATCTG ATGCTCGGCA ACCCGCACGC GACCGAGCAG
GAGCTGTTGC AGGCGCTGCG TATTAGCGGC GCGCTCAGCC TGATCCAACA GGATGCTTCC
AGTCTGGATC GCATCATTCA TGAAGGTGGA CGCGGTTTGT CCGGCGGGCA GCGGCAGATG
ATTCTGCTCA GCAGGATGCT GTTACGTCAT CCCCAGATCG TCCTGCTGGA TGAACCCACC
GCCTCGATGG ACGAACAGTT GGAAAGCCAC GTTATTCACC AGTTAAGCAG TTGGCTCACG
GGGCGCACGC TGGTGCTGGT GACACACCGC CCGGCGCTGC TCAAGCTGGT TGACCGCGTG
GTCGTGATGG ATGGCGGGCG CATCGTGGCA GATGGCCCGC GTGACCAGAT TTTGAAGGCC
GTCAGTAAAC CGGCAGACAG CGCACAGAGC GTGGCGTAA
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| Protein sequence | MTHVTQTEIW IAAMARAAAH YGQVVDIQSV RQQMRWYEQQ PIARQLEQIS HLMGLSISLR
HTEKLRWRNK ILPVLAETDD GGVIVIESLN DEGIATYWLN DGGDLQREAE LTELIKHSQG
IIVLVGIAER GRDTRIDDFV KPYRKHWFWQ HFRGAKRQIG EISLASIVGN VLALAGILFS
MQVYDRVIPA QSIPTLWVLF FGVLLAAALE YAIRLSRTVV SDLMGKSIDL HVSGMLFARA
LAIKNEARPK STGSFISQLR EIDQVRELLT STTVGAAADM PFVFLFLGIM AMIGGPLVLI
PMLAIPLIVI PGLMLQWPMA KLAKEGMRES ALRNAVLVES IEGIEDIKAL QAEPYFQRQW
EQTHEVSAAI GMKQRVWGAR LSGWASTVQQ LTYAGMLVFG SYLVLAGDIT TGTLVACSLL
SSRTIAPLMQ LTMVFSRWQH AKTAMTGLDD ILQKPLDRPE EGKMAHCPIL QGHFQLHNVQ
YSYDPEQGDT ALQVGKLEIK PGEKVALLGK VGAGKSTLLK LLANQATATR GKVIIDGVDI
SQIDPADVRR QLGFLSQESR LFFGSLRQNL MLGNPHATEQ ELLQALRISG ALSLIQQDAS
SLDRIIHEGG RGLSGGQRQM ILLSRMLLRH PQIVLLDEPT ASMDEQLESH VIHQLSSWLT
GRTLVLVTHR PALLKLVDRV VVMDGGRIVA DGPRDQILKA VSKPADSAQS VA
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