| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0991 |
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| Symbol | |
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| ID | 8131920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1140000 |
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| End bp | 1141169 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644864274 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_003016576 |
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| Protein GI | 253687386 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAGCA TCACTATCCA TGATGACCTG AAACGTCAGG GGCGGCGCGT CTCCGTCATT
ATCTGGCTCA GCCTGCTGGG GCTGGTCGTA TTTTTTATCT GGGCCACCTT CGCCGTGCTG
GATGAAGTCT CGGTCGGGAG CGGCAAAGTG ACACCGTCGA CCCGCGCGCA GGTGATTGAA
AGCCTGGACG GCGGGATCAT CGGCCAACTG TATGTGCAGC AGGGCAACGT CGTCGAGAAA
GGTCAGGTGC TGGCGCAGTT GGACGTCAAC CGCTTCCAGT CGGTCTACGG TGAAGCCTTC
TCCCGCGTGC AGACGCTGCG GGCGTCCGCC GAACGTCTGC ACGCCGAGCT CAGCGGCGAA
CCGCTCAAAT TCAGCGCGGA AACCCTGAAG GAACCGGCGC TGGCCGCACG CGAGCGCCAG
CTTTATGAAT CACGCTTGCG TAATCGCGAT GAAACGGTCG CCAACCTGCA ACAATCGATG
CGGCTGGTGG AGCAAGAACT GCGGATGACA GAGCCGCTGG TGCAGCGAGG TGCCGCCAGC
GCCGTCGAGG TGATTCGGTT GCGCCGCCAG ATTAGCGAAA TCCGCGGAAA AATCGATGAA
GCCCGCAACC AATACGCCGT ACGGGCGCGG GAAGAACAGG TCAAGAACAA CGCCGATCTG
GAAGCACAAA TGGAAGTGGT CAGCGGGAAA GCCGACCAGC TCAAGCGTGC CACCATTACG
TCACCGGTAC GCGGAATTGT GAAAGACATT CAGGTAACGA CCGTTGGCGG CGTGCTGCAA
CCGGGCGGCA AGCTGATGGA AATCGTACCG CTGGAAGATC AGTTGCTGAT CGAAACGCGC
ATCAACCCGC GTGATATTGC CTATATTCGG CCGGGTTTGC CTGCCACGGT AAAAATCACC
GCTTATGATT CCTCCATCTA CGGCAACTTA ACCGGTGAAG TCGAAAGCGT ATCGCCCGAT
ACCCTTCAGG ACGAAGTCAG GCGCGATCAG TTTTATTATC GGGTCTATGT GCGCACCACG
CAGGCGGAGC TGACCAATAA AGCCGGAGAG AAATTCCCCA TCGTGCCCGG TATGGTCGCC
AGCGTGGAGA TAAAAACTGG CCAGAAGAGC GTGCTGGACT ATCTGATTAA GCCGTTGAAC
AAGGTCAATG AAGCGCTGCG TGAACGTTAA
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| Protein sequence | MSSITIHDDL KRQGRRVSVI IWLSLLGLVV FFIWATFAVL DEVSVGSGKV TPSTRAQVIE
SLDGGIIGQL YVQQGNVVEK GQVLAQLDVN RFQSVYGEAF SRVQTLRASA ERLHAELSGE
PLKFSAETLK EPALAARERQ LYESRLRNRD ETVANLQQSM RLVEQELRMT EPLVQRGAAS
AVEVIRLRRQ ISEIRGKIDE ARNQYAVRAR EEQVKNNADL EAQMEVVSGK ADQLKRATIT
SPVRGIVKDI QVTTVGGVLQ PGGKLMEIVP LEDQLLIETR INPRDIAYIR PGLPATVKIT
AYDSSIYGNL TGEVESVSPD TLQDEVRRDQ FYYRVYVRTT QAELTNKAGE KFPIVPGMVA
SVEIKTGQKS VLDYLIKPLN KVNEALRER
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