| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0989 |
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| Symbol | |
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| ID | 8131918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1138548 |
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| End bp | 1139756 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644864273 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003016575 |
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| Protein GI | 253687385 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATATC AATCAGGTAA GCGAGTTTTA TCACTATCAC TGGGTCTTAT CGGCCTGTTC
AGCGCATCGG CATTTGCTTC TGACTCACGA ACGGTGAGCG AGCCGAAAGC ACCGTCCTCC
TGTACGGTAC TGAAAGCGGA CAGCAGCACG GCCACCAGCG CCATTCAAAA AGCGTTGAAT
AACTGCGGAC AAGGCAAAGC GGTCAGGCTG AGCGCGGGGA GTTCCTCCGT CTTTGTGAGT
GGTCCACTTT CTCTGCCTTC GGGCGTCAGC TTATTAATCG ATAGCGGGGT GACGCTACGA
GCTCTGAATA ACGCCAAGTC TTTTGAGAAT GCGGCGTCAT CCTGTGGCGT AGTGGATAAC
AACGGTAAAG GTTGTAATGC ATTTATTACC GCTACGAGTA CGACGAACAG CGGAATCTAT
GGGCCGGGCA TCATTGATGG GCAAGGGGGC GTGAAGCTTC AGGATAAAAA GGTGAGCTGG
TGGGATCTGG CTGCTGACGC CAAAGTGAAA AAGCTAAAAC AGAATACCCC GCGGCTGATT
CAGATTAATA AGAGTAAGAA TTTCACACTG TATAACGTCT CTCTCATTAA CTCCCCTAAC
TTCCACGTCG TGTTCAGCGA TGGTGATGGT TTCACCGCGT GGAAAACCAC GATCAAAACC
CCTTCCACCG CGAGAAACAC CGACGGTATC GATCCGATGT CATCAAAAAA CATCACGATT
GCCCACAGCA ATATTTCGAC GGGTGACGAT AACGTGGCGA TCAAAGCCTA TAAAGGCCGT
GCCGAGACAC GCAACATTTC CATTTTGCAT AATGAATTCG GAACGGGTCA CGGTATGTCG
ATCGGCAGCG AAACGATGGG GGTTTACAAT GTCACCGTCG ATGATCTGAA CATGAATGGC
ACCACGAATG GCTTGCGCAT TAAGAGTGAC AAATCGGCTG CCGGGGTGGT CAACGGCATT
CGGTATAGCA ATGTGGTTAT GAAGAATGTG GCGAAGCCGA TTGTGATTGA TACGGTATAT
GAGAAGAAAG AGGGAAGTAA TGTGCCTGAC TGGAGCGACA TTACGTTTAA AGATATTACC
TCCCAAACCA AAGGTGTGGT TGTGCTGAAC GGCGAAAACG CGAAAAAGCC GATCGAAGTG
ACGATGAAGA ACGTCAAACT GACGAGCGAC AGCACATGGC AGATCAAGAA CGTCACCGTT
AAGAAGTAA
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| Protein sequence | MEYQSGKRVL SLSLGLIGLF SASAFASDSR TVSEPKAPSS CTVLKADSST ATSAIQKALN
NCGQGKAVRL SAGSSSVFVS GPLSLPSGVS LLIDSGVTLR ALNNAKSFEN AASSCGVVDN
NGKGCNAFIT ATSTTNSGIY GPGIIDGQGG VKLQDKKVSW WDLAADAKVK KLKQNTPRLI
QINKSKNFTL YNVSLINSPN FHVVFSDGDG FTAWKTTIKT PSTARNTDGI DPMSSKNITI
AHSNISTGDD NVAIKAYKGR AETRNISILH NEFGTGHGMS IGSETMGVYN VTVDDLNMNG
TTNGLRIKSD KSAAGVVNGI RYSNVVMKNV AKPIVIDTVY EKKEGSNVPD WSDITFKDIT
SQTKGVVVLN GENAKKPIEV TMKNVKLTSD STWQIKNVTV KK
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