| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0964 |
|---|
| Symbol | |
|---|
| ID | 8131893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1114149 |
|---|
| End bp | 1116713 |
|---|
| Gene Length | 2565 bp |
|---|
| Protein Length | 854 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644864248 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_003016550 |
|---|
| Protein GI | 253687360 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0854968 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATT CTACCGACAA GGACTTCACC GCCCACACGC CCATGATGCA GCAGTACTTT
AGGTTAAAGG CTGAGCATCC GGAAATCCTG CTGTTTTACC GCATGGGTGA TTTCTACGAA
CTGTTCTATG ACGATGCCAA GCGGGCTTCC CAACTGCTGG ACATTTCGCT GACGAAGCGC
GGCGCCTCCG CAGGGGAGCC GATACCGATG GCGGGCGTCC CTCATCATGC TGTTGAAAAC
TACCTTGCCA GATTGGTGCA GATGGGCGAA TCCGTCGCTA TCTGTGAGCA GATCGGCGAT
CCGGCCACCA GCAAAGGTCC GGTAGAACGT AAAGTCGTAC GTATCGTCAC GCCGGGAACC
ATCAGCGACG AAGCACTCTT GCAGGAAAAG CAGGATAACC TGCTGGCAGC GATCTGGCAG
GATAGTCGGG GATTCGGCTA TGCCACTCTG GATATCAGCT CAGGGCGCTT TCGCGTGAGC
GAGCCGACCG ATCGGGAAAC CATGGCGGCC GAACTACAGC GCACCAACCC GGCGGAGTTA
CTCTACCCGG AATCCTTTGA GTCCATGGAT TTGATCGAGA ACCGCCACGG ACTACGCCGT
CGTCCTCTGT GGGAGTTTGA ACCAGATACC GCACGCCAGC AGCTTAACCT GCAATTTGGC
ACCCGCGATC TGACCGGTTT CGGCGTAGAG CAGGCCAAGC TCGCATTACG GGCCGCAGGC
TGCCTGCTGC AATACGCGAA AGACACCCAG CGTACCTCTC TGCCGCATAT CCGTGGGATT
ACCATGGAGC GCCAGCAGGA CGGCATCATC ATGGATGCGG CCACCCGCCG TAACCTTGAA
CTGACGCAAA ATCTGTCCGG CGGCGTGGAA AATACGCTGG CTGCCGTGCT GGATTGCACC
GTAACCGCCA TGGGCAGCAG GATGCTGAAG CGCTGGATTC ATATGCCCAG CCGCGATATT
GATGCGTTGC AACAGCGCCA GCAGGCTATC AGCGCGTTGC AGGACATCAC GCCCGATCTG
CAACCCTATC TGCGACAGGT CGGCGATCTG GAGCGTATTC TGGCGCGACT CGCATTGCGC
ACAGCACGTC CGCGCGATCT GGCGCGTATG CGCCATGCTT TCCAACAGTT TCCCGATATT
CGTGAGCAGC TTGCACCGCT GGATATTGAC TCCGTTCGTC GTCTGGTCAG CCTGATTGGG
CAATTTGATG AACTACGCGA CTTGCTGGAA CGCGCGGTTA TCGAAGCACC GCCCGTGCTG
GTTCGTGACG GTGGCGTCAT CGCGCCGGGC TACAATGCGG AACTGGACGA GTGGCGCGCG
CTGGCCGATG GCGCCAGCGA TTATCTGGAT CGTCTGGAAA TTCGTGAACG AGAAAAACTG
GGACTCGATA CGCTGAAAGT CGGCTTTAAT GGCGTACACG GCTATTACAT TCAGGTAAGC
CGTGGCCAAA GCCATCTGGT GCCGATCCAC TATGTACGCC GCCAGACGCT GAAAAATGCC
GAACGCTACA TCATCCCCGA ACTGAAAGAG TACGAAGATA AGGTTCTGAC CTCGAAGGGC
AAAGCGCTAG CGTTGGAAAA AGCGCTCTAT GATGAGCTTT TCGATCTGCT GCTGCCACAT
CTGGCCGAGC TTCAACAAAG CGCAGCCGCG CTGGCCGAGT TGGATGTCCT GACGAATCTG
GCCGAACGTG CCGATACGCT GAATTATGTC TGCCCAACGC TGAGTGATAA ACCCGGTATC
AAAATCACGG GCGGCCGTCA CCCTGTCGTT GAGCAGGTGC TCCGTGAGCC GTTTATTTCG
AACCCCCTGT CGCTGTCACC ACAGCGTCGT ATGCTGATTA TCACTGGCCC GAACATGGGC
GGTAAAAGTA CCTATATGCG TCAGGCCGCA CTGATTGTGC TGATGGCGCA CATCGGCTGC
TTTGTGCCTG CGGATCAGGC GGTTATTGGC CCCGTCGATC GTATTTTCAC TCGCGTGGGG
GCCGCGGACG ATCTGGCATC TGGCCGCTCT ACCTTTATGG TGGAAATGAC GGAAACGGCG
AACATTCTGC ACAACGCCAC GGAAAACAGC CTGGTATTGA TGGACGAAAT CGGTCGTGGA
ACCTCAACCT ACGACGGCCT GTCACTGGCT TGGGCCTGTG CCGAAAATCT GGCGAACCGC
ATCAAAGCCA TGACGCTGTT TGCAACACAC TACTTTGAGC TGACCACCCT GCCGGAAAAA
ATGGAAGGTG TGGTGAATGT TCACCTAGAT GCACGCGAAC ACGGCGATAC CATTGCCTTC
ATGCACAGTG TACAAGACGG TGCGGCCAGC AAAAGTTATG GTCTTGCCGT TGCCGCTCTG
GCTGGCGTAC CGAAAGAAGT GATTAAGCGC GCACGCCAGA AACTGAAGGA GCTGGAAATG
TTGTCGAATA ATGCGTCATC CAGCCATATT GATGGTGCGC AGTTGGCGCT GCTGGGCAAT
GATGAGCCGT CTCCGGCCAT TGAAGCGCTG GAAGCCATCG ACCCTGATGC GCTCACGCCA
CGTCAGGCGC TCGATTGGCT TTATCAGCTA AAGAAAATGC TCTAG
|
|---|
| Protein sequence | MKDSTDKDFT AHTPMMQQYF RLKAEHPEIL LFYRMGDFYE LFYDDAKRAS QLLDISLTKR
GASAGEPIPM AGVPHHAVEN YLARLVQMGE SVAICEQIGD PATSKGPVER KVVRIVTPGT
ISDEALLQEK QDNLLAAIWQ DSRGFGYATL DISSGRFRVS EPTDRETMAA ELQRTNPAEL
LYPESFESMD LIENRHGLRR RPLWEFEPDT ARQQLNLQFG TRDLTGFGVE QAKLALRAAG
CLLQYAKDTQ RTSLPHIRGI TMERQQDGII MDAATRRNLE LTQNLSGGVE NTLAAVLDCT
VTAMGSRMLK RWIHMPSRDI DALQQRQQAI SALQDITPDL QPYLRQVGDL ERILARLALR
TARPRDLARM RHAFQQFPDI REQLAPLDID SVRRLVSLIG QFDELRDLLE RAVIEAPPVL
VRDGGVIAPG YNAELDEWRA LADGASDYLD RLEIREREKL GLDTLKVGFN GVHGYYIQVS
RGQSHLVPIH YVRRQTLKNA ERYIIPELKE YEDKVLTSKG KALALEKALY DELFDLLLPH
LAELQQSAAA LAELDVLTNL AERADTLNYV CPTLSDKPGI KITGGRHPVV EQVLREPFIS
NPLSLSPQRR MLIITGPNMG GKSTYMRQAA LIVLMAHIGC FVPADQAVIG PVDRIFTRVG
AADDLASGRS TFMVEMTETA NILHNATENS LVLMDEIGRG TSTYDGLSLA WACAENLANR
IKAMTLFATH YFELTTLPEK MEGVVNVHLD AREHGDTIAF MHSVQDGAAS KSYGLAVAAL
AGVPKEVIKR ARQKLKELEM LSNNASSSHI DGAQLALLGN DEPSPAIEAL EAIDPDALTP
RQALDWLYQL KKML
|
|---|
| |