| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0954 |
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| Symbol | lpxB |
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| ID | 8131883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1103796 |
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| End bp | 1104947 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644864238 |
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| Product | lipid-A-disaccharide synthase |
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| Protein accession | YP_003016540 |
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| Protein GI | 253687350 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0763] Lipid A disaccharide synthetase |
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| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00185677 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCATCAC GTCCTTTGAC TATTGGGCTG GTCGCCGGGG AAACTTCCGG CGACATCCTT
GGCGCGGGCC TGATCCGATC GCTAAAAGAA AAGGTGCCCG ATGCGCGGTT TGTCGGCGTT
GCTGGACCGC GTATGCAGGC TGAAGGCTGT GAAGCCTGGT ACGAGATGGA AGAGCTGGCC
GTCATGGGCA TTGTTGAAGT GCTGGGTCGG CTTCCTCGCC TGCTGAAAAT TCGGCGGGAT
TTGACCCAAC GTTTCAGCGA ACTTCAGCCC GATGTCTTCG TGGGGATTGA TGCACCTGAT
TTCAACATCA CGCTGGAGGG GAACCTCAAG CAGCGCGGCA TCAATACCAT TCACTACGTT
AGCCCGTCCG TGTGGGCATG GCGTCAAAAA CGCGTTTTCA AAATAGGTAA AGCGACCAAT
CTGGTGCTGG CCTTTTTGCC TTTTGAAAAA GCGTTTTACG ATCGTTTCAA TGTGCCTTGT
CGCTTTATCG GCCACACGAT GGCCGATGCA ATGCCGCTGC ACCCCGATAA GCAGGCCGCG
CGTGCGACGT TGGGCATTGC GCCAGAGGCA CACTGTCTGG CGCTGCTGCC GGGTAGCCGC
AACGCAGAAG TAGAAATGCT TAGCGCCGAT TTCCTCAAGA CCGCTGTACT GCTGCGCGAA
CATTTTCCCG ATCTGGAAAT TGTCGTTCCG CTGGTGAACA GCAAGCGGCG TGAACAGTTT
GAACAGATCA AAAGCAGTGT GGCTCCCGAT TTGCGCGTGC ATCTGCTGGA TGGACAGGCG
CGGGAAGCCA TGATTGCCAG TGATGCGGCG CTATTGGCAT CCGGTACGGC GGCGCTGGAG
TGTATGCTGG CAAAGTGCCC GATGGTGGTG GGTTACCGCA TGAAACCCTT TACCTTCTGG
CTGGCACAGC GTCTGGTCAA AACACAGTGG GTGTCGCTGC CGAATTTGCT GGCTGGGCGT
GAACTGGTGA CGGAATTGCT TCAGACCGAC TGTACACCTG ACAAGCTGGC CGCCGCGCTA
TTGCCGCTGT TTGCAGATTC GGATAAAACG GCTGCGCTGC GTACGACATT TGTGGATTTG
CATCAGCAGA TTCGCTGTAA CGCTGATGAG CAAGCGGCTC AGGCGGTACT GGAATTAGTC
AAGCCGCGTT AA
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| Protein sequence | MSSRPLTIGL VAGETSGDIL GAGLIRSLKE KVPDARFVGV AGPRMQAEGC EAWYEMEELA
VMGIVEVLGR LPRLLKIRRD LTQRFSELQP DVFVGIDAPD FNITLEGNLK QRGINTIHYV
SPSVWAWRQK RVFKIGKATN LVLAFLPFEK AFYDRFNVPC RFIGHTMADA MPLHPDKQAA
RATLGIAPEA HCLALLPGSR NAEVEMLSAD FLKTAVLLRE HFPDLEIVVP LVNSKRREQF
EQIKSSVAPD LRVHLLDGQA REAMIASDAA LLASGTAALE CMLAKCPMVV GYRMKPFTFW
LAQRLVKTQW VSLPNLLAGR ELVTELLQTD CTPDKLAAAL LPLFADSDKT AALRTTFVDL
HQQIRCNADE QAAQAVLELV KPR
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