Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0935 |
Symbol | |
ID | 8131864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1083565 |
End bp | 1084365 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644864219 |
Product | tRNA pseudouridine synthase C |
Protein accession | YP_003016521 |
Protein GI | 253687331 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00065013 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCAGT ACACGATGCT TGAGATCATT TATCAGGATG AGCATCTGGT CGCCGTCAAT AAACCCAGCG GCTGGTTAGT CCACCGTAGC TGGCTGGATC GCAAAGAAAA GGTCGTGGTG ATGCAGACCG TGCGCGATCA GATCGGCCAA CACGTGTATA CCGTCCATCG TCTCGACAGG CCGACATCCG GCGTGTTGCT GCTCGCGCTG TCCAGCGAGG TGGCCCGTGC GTTATCCCAG CAGTTTGAAT CACACCAGAT GCAGAAAATG TATCATGCTG TTGTGCGGGG CTATGTACTG GATGACGGCG TGATCGACTA TGCGCTCACC GAAGAGCTGG ACAAGATCGC CGACAAGTTC ACTAATCCTG ATAAGGCACC GCAGCCTGCC GTCACGCATT ATCGTTCTTT GGCGCAGGTC GAAATGCCGG TTGCCATCGG CCGTTACCCA ACGGCACGCT ACAGTCTGAT GGAACTGAAG CCGCAGACCG GGCGTAAGCA TCAGCTTCGT CGCCATATGT CACACCTTCG TCATCCCATT ATCGGCGATA CCGCGCACGG TGATCTGCGA CACAACCGTG GCATGGAGAC ACATTTCTCC TGCGGCAGGC TTATGCTGCA TGCCAGCGAG CTGCAGCTGA ATCATCCAGT GAGCGGACAG CCATTGACGT TGCAAGCTCG CTGGGATGCG CCGTGGCAGG GCGTGATGAC TCAGTTTGGC TGGCAGGGCA TTCTCCCTGA TTTTGAAGGG GTTGAGTTTC CCGCCGACTC GGGTCAGGAT AGCGAGCATT TCATCGGGTA A
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Protein sequence | MAQYTMLEII YQDEHLVAVN KPSGWLVHRS WLDRKEKVVV MQTVRDQIGQ HVYTVHRLDR PTSGVLLLAL SSEVARALSQ QFESHQMQKM YHAVVRGYVL DDGVIDYALT EELDKIADKF TNPDKAPQPA VTHYRSLAQV EMPVAIGRYP TARYSLMELK PQTGRKHQLR RHMSHLRHPI IGDTAHGDLR HNRGMETHFS CGRLMLHASE LQLNHPVSGQ PLTLQARWDA PWQGVMTQFG WQGILPDFEG VEFPADSGQD SEHFIG
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