Gene PC1_0935 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0935 
Symbol 
ID8131864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp1083565 
End bp1084365 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content57% 
IMG OID644864219 
ProducttRNA pseudouridine synthase C 
Protein accessionYP_003016521 
Protein GI253687331 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00065013 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCAGT ACACGATGCT TGAGATCATT TATCAGGATG AGCATCTGGT CGCCGTCAAT 
AAACCCAGCG GCTGGTTAGT CCACCGTAGC TGGCTGGATC GCAAAGAAAA GGTCGTGGTG
ATGCAGACCG TGCGCGATCA GATCGGCCAA CACGTGTATA CCGTCCATCG TCTCGACAGG
CCGACATCCG GCGTGTTGCT GCTCGCGCTG TCCAGCGAGG TGGCCCGTGC GTTATCCCAG
CAGTTTGAAT CACACCAGAT GCAGAAAATG TATCATGCTG TTGTGCGGGG CTATGTACTG
GATGACGGCG TGATCGACTA TGCGCTCACC GAAGAGCTGG ACAAGATCGC CGACAAGTTC
ACTAATCCTG ATAAGGCACC GCAGCCTGCC GTCACGCATT ATCGTTCTTT GGCGCAGGTC
GAAATGCCGG TTGCCATCGG CCGTTACCCA ACGGCACGCT ACAGTCTGAT GGAACTGAAG
CCGCAGACCG GGCGTAAGCA TCAGCTTCGT CGCCATATGT CACACCTTCG TCATCCCATT
ATCGGCGATA CCGCGCACGG TGATCTGCGA CACAACCGTG GCATGGAGAC ACATTTCTCC
TGCGGCAGGC TTATGCTGCA TGCCAGCGAG CTGCAGCTGA ATCATCCAGT GAGCGGACAG
CCATTGACGT TGCAAGCTCG CTGGGATGCG CCGTGGCAGG GCGTGATGAC TCAGTTTGGC
TGGCAGGGCA TTCTCCCTGA TTTTGAAGGG GTTGAGTTTC CCGCCGACTC GGGTCAGGAT
AGCGAGCATT TCATCGGGTA A
 
Protein sequence
MAQYTMLEII YQDEHLVAVN KPSGWLVHRS WLDRKEKVVV MQTVRDQIGQ HVYTVHRLDR 
PTSGVLLLAL SSEVARALSQ QFESHQMQKM YHAVVRGYVL DDGVIDYALT EELDKIADKF
TNPDKAPQPA VTHYRSLAQV EMPVAIGRYP TARYSLMELK PQTGRKHQLR RHMSHLRHPI
IGDTAHGDLR HNRGMETHFS CGRLMLHASE LQLNHPVSGQ PLTLQARWDA PWQGVMTQFG
WQGILPDFEG VEFPADSGQD SEHFIG