Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0927 |
Symbol | |
ID | 8131856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1075695 |
End bp | 1076618 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644864211 |
Product | DNA-binding transcriptional activator GcvA |
Protein accession | YP_003016513 |
Protein GI | 253687323 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00141405 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAAAC GTCTCCCTCC GCTCAACGCA TTGCGCGTTT TTGATGCGGC GGCTCGCCAT TTAAGCTTTA CCAAAGCGGC AGAAGAACTG TTTGTTACGC AGGCTGCCGT CAGCCACCAG ATTAAGTCAC TGGAAGATTT TCTGGGGCTT AAATTGTTCC GCCGTCGTAA TCGTTCCCTG CTGCTGACGG AAGAGGGGCA AAGTTACTAT CTTGATATCA AAGAGATCTT CTCATCTTTG AATGACGCAA CCCGTAAGCT GCAATCCCGC AGCGCCAAAG GTGCGTTGAC GGTTAGCCTG CTGCCCAGTT TTGCCATTCA TTGGCTGGTA CCGCGTCTGT CGAGCTTTAA CTCCGACTAT CCGGGGATTG ATGTTCGTAT TCAGGCGGTG GATCGTGATG AAGATCGTCT GGCAGATGAC GTGGATGTCG CGATTTTCTA CGGCCGGGGG AACTGGCCGG GGCTACGGGT AGAAAAGCTG TACGCTGAGT ATCTCCTGCC AGTTTGTTCA CCAGCATTGC TGACGGGGAG CCACCCGTTA AAGACGCCTG ATGATTTGGT GGCGCATACG CTGCTGCACG ATGCGTCGCG CCGTGACTGG CTGTCCTATA CGCGTCAGCT TGGGGTGCAA ATTAACGTAC AGCAGGGGCC GATTTTCAGC CACAGTGCCA TGGTGTTGCA GGCGGCCATC CACGGGCAAG GTGTGGCGCT GGCGAATAAT GTTATGGCGC AAACGGAAAT TGAAGCTGGG CGACTGGTGT GTCCGTTTAA CGATGTGCTG GTCAGCCGGA ATGCTTTTTA TCTGGTATGT CATGACAGTC AGGCAGAACT GGGTAAAATA GCCGCCTTTC GCCATTGGAT TCTGGCGCGG GCTGCCAGCG AGCAGGAGAA ATTTCGTTTT CGCTATGACA ACGGCACGCG CTGA
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Protein sequence | MSKRLPPLNA LRVFDAAARH LSFTKAAEEL FVTQAAVSHQ IKSLEDFLGL KLFRRRNRSL LLTEEGQSYY LDIKEIFSSL NDATRKLQSR SAKGALTVSL LPSFAIHWLV PRLSSFNSDY PGIDVRIQAV DRDEDRLADD VDVAIFYGRG NWPGLRVEKL YAEYLLPVCS PALLTGSHPL KTPDDLVAHT LLHDASRRDW LSYTRQLGVQ INVQQGPIFS HSAMVLQAAI HGQGVALANN VMAQTEIEAG RLVCPFNDVL VSRNAFYLVC HDSQAELGKI AAFRHWILAR AASEQEKFRF RYDNGTR
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