| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0925 |
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| Symbol | |
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| ID | 8131854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1073547 |
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| End bp | 1074752 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644864209 |
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| Product | cysteine sulfinate desulfinase |
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| Protein accession | YP_003016511 |
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| Protein GI | 253687321 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0520] Selenocysteine lyase |
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| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily
[TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.002092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACCGT TTAACCCTGC CACCTTTCGC CAACAGTTCC CCGCCCTCCA GCATTCGACG
GTGTATCTTG ATAGCGCCGC GACCGCGCTG AAACCACAGC CCGTCATTGA TGCGGTGCAG
GCGTTCTATT GCAGTGAGAG TGGCACGGTG CATCGCAGCC AGCATCGCGG CGCGCAGGCG
TTAACCCAGC GTTTTGAGGG CGTTCGTGAG CAAGTCGCCA CGTTACTCCA TGCAGACGAT
CCGCGTTCTA TTGTCTGGAC CAGAGGTACG ACGGAAGCAA TCAATCTGGT CGCGCAGAGC
TATGCTCGCC CTCGCCTTCA ACCGGGCGAC GAGATCGTTG TGAGTGAAGC GGAACATCAT
GCCAACCTCA TTCCGTGGCT GATGGTGGCG CAGCAAACCG GCGCGAACGT GGTGAAGTTA
CCGATAGGCA CGGACTTCTT GCCGGACGTT GAACAGCTAG CCACGCTGAT CACGCCCAAA
ACCCGCCTGC TGGCGCTGGG GCAAATGTCA AACGTGACGG GCGGTCAGCC CGATCTGGCA
CGCGCGATTG CACTGGCTCA CCGCTATGGT GCGGTGGTGA TGGTTGACGG CGCACAAGGC
ATCGTTCACT GTCCACCCGA TGTGCAGGCG CTGGATATCG ATTTCTACGC GTTTTCCGGG
CACAAACTTT ATGCCCCAAC CGGGATTGGC GTGCTGTACG GTAAAACCGC CCTGCTGGAA
AGCATGATGC CGTGGCAAGG CGGCGGGAAA ATGATGACAC AGGTGTCCTT TGACGGCTTT
AAACCGCAGG CGATTCCACA ACGGTTTGAG GCGGGAACGC CACACATTGC CGGCGTACTT
GGCCTGTCTG CGGCGTTAGA CTGGCTGACC ACACAAGATC AGCACGCCGC AGAACAGCAC
AGCCAGAGTT TGGCACAGCT CGCTGAAACC CATCTGGCGC AGTTCCCCGG CTTTCGCAGC
TTCCGTTGCC CGCAGTCCAG CGTCCTATCC TTTGACATTG CTGATGTGCA CCACAGCGAT
CTGGTGACGC TATTAGCCGA AAGCGGCATT GCGCTGCGTG CCGGACATCA CTGTGCGCAG
CCGCTCATGG AGGCGCTCGG CGTCAGTGGC ACGCTCCGCG CCTCATTTGC GCCGTACAAT
AACCAACAAG ATGTTGCTGC GCTGATCGCC GCGGTAGGCA ACGCCCTTGA ATTACTGATC
GACTAA
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| Protein sequence | MTPFNPATFR QQFPALQHST VYLDSAATAL KPQPVIDAVQ AFYCSESGTV HRSQHRGAQA
LTQRFEGVRE QVATLLHADD PRSIVWTRGT TEAINLVAQS YARPRLQPGD EIVVSEAEHH
ANLIPWLMVA QQTGANVVKL PIGTDFLPDV EQLATLITPK TRLLALGQMS NVTGGQPDLA
RAIALAHRYG AVVMVDGAQG IVHCPPDVQA LDIDFYAFSG HKLYAPTGIG VLYGKTALLE
SMMPWQGGGK MMTQVSFDGF KPQAIPQRFE AGTPHIAGVL GLSAALDWLT TQDQHAAEQH
SQSLAQLAET HLAQFPGFRS FRCPQSSVLS FDIADVHHSD LVTLLAESGI ALRAGHHCAQ
PLMEALGVSG TLRASFAPYN NQQDVAALIA AVGNALELLI D
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