Gene PC1_0879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0879 
Symbol 
ID8131805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp1022954 
End bp1024045 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content54% 
IMG OID644864160 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003016465 
Protein GI253687275 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGCGA TTCCCTTACC GTTTATCACC GCACTTCTGC TGGTTATTTT GTTTTTTCGC 
ATCCTATTTC TGGATATTCA GCACAATCTT CCTGACAAGA ACACCAAAAA ACGCAATGCC 
AAGGCGGAAG CGGTCTTCAT CGGCGTGAGC TGTCTTGCTC TGACGCTGGT GGCATTACGC 
TGGGGTAGCC ACGTGGCTTT ACCCCTGTTT ATCCAACCTG CGATTGCCGC ATCAATTCCG 
CCTCTGCTAT GGCTTTGCCT TTTCCCACGC GGCGAAAAGA AATCTGAGGA TCTGCCCCGC 
AGACGCGGCA GTTCTCTCGG GCATCTGTTA CCACCTTTAC TCATTCTTGG CGCAAACGCC 
GTCCAAAGCA AAACGACCAT TCCGCTCATC GATATAACGC TGGTGAGTAT TTACTTCGTT 
TATGGAGTCG CGCTGATTTA CACCGCCCGC CTTCTTCAAA CATCAGCGTC TATGTGGAAA 
CGCGCGCCGT TTATCGCCGG GCTGTATGTG TTGATCTCCG GCGCGATTGA TATGGTGATT 
GCACTGGATA TCGCGTTCTA CAGCGGCAGC CGCGCGACGA CCATCATCAC CGCATTCCAC 
CTTGTCATGC TGGCGATATT GACCCTGCTG ATCGTCACAC ACCGTGCAAG CCCGCAAGCA 
GGGCTTGTCC CGCCAACTGA CCCGAAACCC GAAGCACCGC CTGCCACCGA AGACGAACAC 
CAGCTCGCAA AAGCGTTAGA TGATTTCATC CGCACTCACG CGCTGTATAC CGATCCGGGC 
ATGACGCTTC AACGTCTGAG CAGACGCATG GGCATACCGC TCCGGCGCTT GTCCGAAACC 
ATCAACCGCG TTCACGGTCG TAATTTTTCT CAGGTGATGA ACGAATATCG CATCGAGGAG 
GCTAAGCGCC TCCTCAGCGA AACAGATGAC CGAATTACGG ATATCATGCT GGCCAGCGGA 
TTTCAGACCA AATCAAACTT CAACCGCGAA TTTCTGCGGC TAACGGGAAT GAGCCCCAGC 
GTCTGGCGTA GTCAGTACCC ACTTCGGGAA CAGGTTACGG TTTCTGCCAC GCCGCCTGAA 
GAAACTCTCT GA
 
Protein sequence
MTAIPLPFIT ALLLVILFFR ILFLDIQHNL PDKNTKKRNA KAEAVFIGVS CLALTLVALR 
WGSHVALPLF IQPAIAASIP PLLWLCLFPR GEKKSEDLPR RRGSSLGHLL PPLLILGANA 
VQSKTTIPLI DITLVSIYFV YGVALIYTAR LLQTSASMWK RAPFIAGLYV LISGAIDMVI 
ALDIAFYSGS RATTIITAFH LVMLAILTLL IVTHRASPQA GLVPPTDPKP EAPPATEDEH 
QLAKALDDFI RTHALYTDPG MTLQRLSRRM GIPLRRLSET INRVHGRNFS QVMNEYRIEE 
AKRLLSETDD RITDIMLASG FQTKSNFNRE FLRLTGMSPS VWRSQYPLRE QVTVSATPPE 
ETL