| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0871 |
|---|
| Symbol | |
|---|
| ID | 8131796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1011767 |
|---|
| End bp | 1013026 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644864151 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003016457 |
|---|
| Protein GI | 253687267 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTGA CTGATACCGC CATCCGCAAC GCCAAACCGC TCGATAAACC TTACAAGCTC
AGCGACGCGC AGGGTCTGTA CCTGCTGATT AAACCTAACG GTTCCAAGCT CTGGCATCTT
AAGTACCGCT TCGGCGGCAA GGAGAAGAAG CTAGCGTTTG GCGCTTACCC GACTGTCTCG
CTTGCCAGTG CCCGTAAACT GCGTGAAGAA GCACGAACTA TTCTCAGCGT AGGGGACGAT
CCCGGCGTAA AAAAACAGCA CGACAAACAG GCGAAGAAAA ACGGCAATAC CTTTGAAGCC
ATCGCTCGTC AGTGGGTGGC CGCGAACATT CGCTGGAGTG AGGCACACGC CGCCAAAGTT
CTGCGTTCAC TGGAACTGCA CGTTTTCCCG CTCATCGGCA ATGTCCTTGT CACCGACCTG
AAAACCGCCA ACCTGCTGAT CCCGCTGCGG GTAGCGGAGA AAAAGGGTTG TCTGGAAACG
GCTACACGGA TACAGCAACG CACGACAGTC ATCATGCGTT ACGCCGTACA GGAAGGACTG
ATTGCCAGCA ATCCGGCCAA TGACCTCTGC GGCGCAATCA CCCCGCCGCC GAAAAACCAT
TACCCTGCCC TACCGCTGGA AAAATTGCCG GAACTGCTGG AAAGAATAGA AGGCTATTCA
GGCAGACTGC TAACAAGGTT GGCCGTACAG CTTAATTTGC TGATCTTTAT CCGCTCCAGT
GAATTGCGTT TTGCCCGTTG GACGGAGATC GATCTGGATA ACGCCATGTG GACACTTCCT
GCACAACGGG AGCCCATAGC TGGCGTGCGT CACTCAGAGC GCGGCGCAAA AATGAAAACG
CCACATCTGG TGCCGCTGTC AAAACAGGCG GTAACGGTGC TGAAACAGCT AAAACTGTTG
TCCGGCAACG GGGAATTACT CTTTCCCGGC GATCACGATG CCCGTAAGCC AATGAGTGAA
AACACCATCA ACAAGGCGCT GCGCACAATG GGTTATGACA CACAGGTGGA TATCTGCGGA
CATGGCTTCC GCACGATAGC GTGTAGTGCG TTGATCGAAT CAGGTCGCTG GTCAAAAGAT
GCTGTGGAGC GGCAGATGAG CCATCAGGAG CGCAATCACG TTCGCGCCGC CTATATTCAC
AAGGCGGAAC ACCTCGACGA ACGGACTCAG ATGATGCAAT GGTGGTCAGA TTATCTCGAT
GCCTGCCAGC ATCAATTCAT CCCGGCTTAT CGCTTTGAGA AGTCGATTAA GGTTGCCTGA
|
|---|
| Protein sequence | MPLTDTAIRN AKPLDKPYKL SDAQGLYLLI KPNGSKLWHL KYRFGGKEKK LAFGAYPTVS
LASARKLREE ARTILSVGDD PGVKKQHDKQ AKKNGNTFEA IARQWVAANI RWSEAHAAKV
LRSLELHVFP LIGNVLVTDL KTANLLIPLR VAEKKGCLET ATRIQQRTTV IMRYAVQEGL
IASNPANDLC GAITPPPKNH YPALPLEKLP ELLERIEGYS GRLLTRLAVQ LNLLIFIRSS
ELRFARWTEI DLDNAMWTLP AQREPIAGVR HSERGAKMKT PHLVPLSKQA VTVLKQLKLL
SGNGELLFPG DHDARKPMSE NTINKALRTM GYDTQVDICG HGFRTIACSA LIESGRWSKD
AVERQMSHQE RNHVRAAYIH KAEHLDERTQ MMQWWSDYLD ACQHQFIPAY RFEKSIKVA
|
|---|
| |