| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0842 |
|---|
| Symbol | |
|---|
| ID | 8131767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 981424 |
|---|
| End bp | 982380 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644864124 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003016430 |
|---|
| Protein GI | 253687240 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.404534 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTTC AGTCACCCGA TTTGATCAGC GAGCTTCTAC GTGGGATGCG TCTTTCCGGG
GTGACATATC GCCGAATTGA AACCCATGCT CCCTTTGGTG TGGCGTTCCA CTACGTGCCC
GGCAAGGCGC AGTTTCATTT TGTCAGTCAG GGAACGGCGC TGCTGCGCAT GGAGAGTGGC
ACGACGTTTG CGCTAAAAAG CGGGGATGCG CTGTTTATCC CCAACGGGAA TTCGCACGCG
CTGCTCTCTG ACGAAAAAGC TGACGTCACG CCAGTGTCTG CATTTCCCAG CGAAGCGATC
TGTAATTCGG TCTGTGCGAT AGATTGCAAG CCCTGCCCAG ATACCGAGAA CACGGTCATC
TTCAGCGGAT GTATGGACTT TGAACTGGGC GGAATGCAGC CGCTGATCAA AGCCATGCCG
GAAGTCATGA TGGTGAGTCG ATTGATGTCG ACCTGGCCGG AAATTCATCC TCTTCTTGTC
GCTATGGAGC GTGAGTCGAT GACACGTCAG GTGGGCTTCG CCGGCATTCT GGCGCGATTG
GCTGATGTGG TCGCGGCGCT CATCGTGCGC GGATGGGTTG AAGCCGGCTG CGGTAAAGCA
ACGGGCTGGG TGCAGGTATT GCGTGATCCA AGGCTGAGCC GGGCGATTTA CGCGATGCAT
CAGAATCCGG GCGTCAACTG GAGCGTCGCG GAACTGGCAA AAGAGGCGGG CACCTCCCGT
TCCGTTTTCG CCGAGCGGTT TCTCTCCGCA ACCGGCACCA CGCCCGTAAA ATATCTCAGC
GAGCTGCGCA TGCGCTTAGC TGTCCAGTAC ATCCGTCATG AACATCAGCC GATTGAAACG
GTGGCGCTAC GTCTGGGTTA CGGATCGCTT GCGGCGTTCA GCCGAGCATT TAAACGTATC
GTAGGCCACG CACCGGGAAC GCTGCGGGAA ACCAGCTTGG CTTCTGAAGA GGTTTGA
|
|---|
| Protein sequence | MTVQSPDLIS ELLRGMRLSG VTYRRIETHA PFGVAFHYVP GKAQFHFVSQ GTALLRMESG
TTFALKSGDA LFIPNGNSHA LLSDEKADVT PVSAFPSEAI CNSVCAIDCK PCPDTENTVI
FSGCMDFELG GMQPLIKAMP EVMMVSRLMS TWPEIHPLLV AMERESMTRQ VGFAGILARL
ADVVAALIVR GWVEAGCGKA TGWVQVLRDP RLSRAIYAMH QNPGVNWSVA ELAKEAGTSR
SVFAERFLSA TGTTPVKYLS ELRMRLAVQY IRHEHQPIET VALRLGYGSL AAFSRAFKRI
VGHAPGTLRE TSLASEEV
|
|---|
| |