Gene PC1_0814 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0814 
Symbol 
ID8131739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp950829 
End bp952694 
Gene Length1866 bp 
Protein Length621 aa 
Translation table11 
GC content54% 
IMG OID644864098 
Productputative avirulence protein 
Protein accessionYP_003016404 
Protein GI253687214 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAAAA TAAAAACACT TCTCACGCCA TTAAACTGTC TGCTTGTTTT AAGCGGTGCC 
TTAATGGTCA ATACGGCAAA CGCCGCCGAG GCTTGTGTCG CGGGTAACTG GCAGGTGGAT
AATTCCATCA CCGATATGCC TTCCGTGAAA TACCAGACAG AGCACTTTGC CTTCCGCTGG
AATAATAATG ACGTTAACCG CAATGATGCG GTTGCCGCTG GGCAGAAACT GGAACAAATT
TGGGATAAGT TTATTAAACA AATTCAGTTC CCCGAGCCTT ATTGCAAGCA GACCGTGAAA
TATAAAGCCA ATATTCACAT TGATCCCACC TTTGGGCTCA GCGGGGGTAT TGCGGGCGGT
GGCAGCATGG GCATGTGGAT CGGCCCTGCC TCGCTCAAGG ATAACTGGGG GCTGGCACAC
GAATTTACCC ATGCGCTGCA AGGGCAAACC GGCGGCTTCC AGAGTTCAGG CGATAACTAC
GTTGGCTGGA TTTGGGAATC CCACGCGAAC TGGATGACGC ACCAGATGGA TGAATTCCGT
GGTACGTCTG CACACTGTTC GGAAATGCAG GTCAACTATC CGCATATTTA TCTGGGTTCA
ACACGTAACC GTTACTGCAA CTGGCAGTTT ATGGAATACC TGAAAAACCG CTTTGGCTAT
GGCGCTATCA ACGATATGTG GTCAAAAGCG CCGAAATGGG GTGAAAGCGG TCAGTCTACT
GCCGATCCGC TGTCCGTTCT GCGTACCAAC ATGGGCTGGA GCCAGTCTGA ATTCAACGAT
GTCTTCGGCG ACTGGGCGAT GCACAACGTC AACTGGGATT ACATCGATCC AGATGGCTTC
GATCGTGGGC GTTTTTATCG TTCAACCTAC GGCAGCTATG GTGCGGTACA ACCCAACCAG
AATAACGCTG ACCGTCTGCT GAGAACCACG ACGCTTGAGC CAGTAGTCGG TGCCAGTGCC
AACCTGCGCC GCTTCTCTGT TCCGTTCGAT CAGGCTCCGC AGCAGTTGGG CTACAACATC
GTCCGGCTGA TCCCAGAAAG TGGTGCGACG CAGATCACCG TCAAATTCCG CGGCATGGTG
CAGAGTAAAT CTGCCATTAC TCGCTTCCCG GGGCTGAAAA ACGATCCGGC AACCATGCCG
CAGCCTAATT CCGACTGGCG CTGGGGGATT GTCGCTATCG GTGCGGACGG CGTTTCTCGC
TACAGTGAAC TACAACGCGG CGCGTCTGCC ACGGTGAAAA ACTTCACTAT CCGTCAGGAC
GATCGCGGCA TTTACATGGT GGTCATGGGG ACACCGTCGC AAATGCAGAA GATCAAGTGG
GATCAGGCTT ACTACTCCCT GTATCGCTAC CCGTGGATGG CTGATTTCAC TGGCGTCTGG
CCGGAAGGCA GCCAGCCTGG TGCGCCAAAT CCAACCGCTA ACGGCTCTCG CCATCCAAAC
GGCGGCGGCT GGGTATCTAA CTCCGCAAAT GTTGCCCCTA CCGCGTACGT CGGGCCTTAT
GCTCGCGTCA TCGGCGGTAC GGTGAGGGAT AACGCCAGAA TTGAAGATCG TGCAACGATT
CTGAGCGGAA CAGTCGAAGG ACGTGCTGTC GTTAGCGGCC TGACGATACT TCAGGGCAAT
ACCGTCGTAC GTGATAACGC ACGGCTGCAT ACGGTCTTCA TGGGGCCGGG CGCGTTTGAA
CGCGGCATTG TGCTGTCAGG CAATGCGCAG ATGCGTGGAG ATGCGGAGAT TCGCGGTGCT
TCCGCATCGC AGGGTGTGTT CTATGGCTTT ATTGATGAAA ATGAAGTCAA AAGCAGCGCA
GCCGGTGCTT ACCTGACCGA AGCCGTGCCA GAAGTGACGG CCGTTCCGGT CTACAGCACG
AAGTAA
 
Protein sequence
MPKIKTLLTP LNCLLVLSGA LMVNTANAAE ACVAGNWQVD NSITDMPSVK YQTEHFAFRW 
NNNDVNRNDA VAAGQKLEQI WDKFIKQIQF PEPYCKQTVK YKANIHIDPT FGLSGGIAGG
GSMGMWIGPA SLKDNWGLAH EFTHALQGQT GGFQSSGDNY VGWIWESHAN WMTHQMDEFR
GTSAHCSEMQ VNYPHIYLGS TRNRYCNWQF MEYLKNRFGY GAINDMWSKA PKWGESGQST
ADPLSVLRTN MGWSQSEFND VFGDWAMHNV NWDYIDPDGF DRGRFYRSTY GSYGAVQPNQ
NNADRLLRTT TLEPVVGASA NLRRFSVPFD QAPQQLGYNI VRLIPESGAT QITVKFRGMV
QSKSAITRFP GLKNDPATMP QPNSDWRWGI VAIGADGVSR YSELQRGASA TVKNFTIRQD
DRGIYMVVMG TPSQMQKIKW DQAYYSLYRY PWMADFTGVW PEGSQPGAPN PTANGSRHPN
GGGWVSNSAN VAPTAYVGPY ARVIGGTVRD NARIEDRATI LSGTVEGRAV VSGLTILQGN
TVVRDNARLH TVFMGPGAFE RGIVLSGNAQ MRGDAEIRGA SASQGVFYGF IDENEVKSSA
AGAYLTEAVP EVTAVPVYST K