Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0810 |
Symbol | |
ID | 8131735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 945282 |
End bp | 947522 |
Gene Length | 2241 bp |
Protein Length | 746 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644864094 |
Product | TonB-dependent receptor |
Protein accession | YP_003016400 |
Protein GI | 253687210 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACCGT TCAAACTTTC TGGGGTATGT TTGTCCGTCG TCGGCGCATT ACTGGCAGGT TCCGCGCTGG CGGAGGACGC GACCAATGTC GGCACCATCA ACGTACAAGG GCAGCCGCTC GGCGCAGGAT TAATGGTTCA GGAAGACAGC GCCAAATCGC GTTCGACCGT GACAAAAGAC GCCCTGGATA AGATGCCCGC AGCAGGCAAC GCCATTGATA AACTGAAATA TACTGCAGGC CTGAACGTCA GCAGTAACGA CGCCAGCGGC TTAAGCGGCG TCAGCTATAC CATGCGCGGC ATGAGCGCGG ATCAGGTCGG CCTGTCATCA GATGGCATTC CCGTCAATGA TTCCGGCGAC TACGCCGTGT ACCCGAACGG CATGGGCGAC CCGGAAAACC TGGAACAGAT TTTTGTCACC CAGGGCTCGT CAGAAATGGA CGGCCCGCAC ATCGGTGCCA GCGGCGGCAA CATCGGGCTG GTTTCCCACC GTCCGGCGAA AGATTTTGGC GGCTTCGTTA AGCAAACGTT CGGCAGCAAC AACCTCAGCA AGACCTTCGC ACGTCTGGAA ACCGGTAAAC ACAACGGCTT CAGCAGTTGG CTCTCCTACT CGTATACCGA CTCCGACAAA TGGCGTGGCG CAGGATATTC CCGTGCCGAT AAAGTCGAAT GGAACGGACT GTATGAACAT GAAAATGGCC ACAGCAGCAG CCTGATTGTG AAATACAATC AGCAAGATAC CATCAACTAC TCGACGCTGA GCAAACGGCA GTTCGAGCAA AACGGGCGCA AGATGGATTA CGCCACGACG CCGGTTTACA ACAGCCGTGG ACAGATTTCT CAATACTACA AAATTAACCG CAATAACTTC GAAACGCTGA ATGTCACCTT CACCCAGAAA TTACAGCTGC GCGATAATCT GGCTTTGACC TTACAACCCT ATTATTTCTC GACGAACGGC GGCAGCCACG GTAGCGGAAG CGCCAGCGTG TTATCCGCAA CGTCGGATCG CGCCGGTAAC TACGACCTTA GCAACCTGAC CTCCAACACC TACTACCGCC CGTCGTGGAC GGAAACCTGG CGGCCTGGTA TCACCACCAA GCTGAAATGG GATCTTAACG ACGAGCATAG CCTGGATATC GGTTACTGGT TTGAGCGTGC TCGCCAGCGC CAAACGCAGC CATTCATTCC GATTAAGAGC GACGGCACCC CGGCTAACAT CTCCGGCAAA CCCGGCGATG CGGATCAAAT CACCGACGCG AACGGAAAGG TGGTTCAAGG CCGTAACCAG TTTACCGTCA CGCCAGCCCA TAAAATCTGG GTACAGGACA CCTGGTTCTT CTCACCAGAA TGGACGTTCA GCGGTGGTCT GGCCTATCAG CACGTAGAAC GTGACGGGAC TAACCTCGGC AGTTTGTATA ACGTCGCAGA GAAAAAGAAC AAGAAATACC ACGAGTTCCT GCCTAGCTTT AACGCGGCCT ACCGCATCAA TACCGAAAAT CAGGTGTTCT ATAACATCAC GCGTAACATG CGTACCCCGC CTAACTACGT CTTGTACAAC GTTGGCGATT CCATCAATAC CAAACCTGAG CTGAGCTGGA ATCAGGAACT CGGCTGGCGC TTCCAGGACG AGGACATGCT GCTGAGCGCC TCGCTGTTCT TTATCCAGTT TACCGACCGT CAGATCTCCA GCCGTGACGC CAACGGCGAT TACGAAATGA TCAACGCCGG GAAAGTGGAA AACAAAGGGC TGGAACTGGA GTGGAGCGGC AAGCTGCCTC ATAACTTCAA CTACTTCGCC GCTTATACCT ACACCGATAC CGAGCAGAAA AACAATCTCG CCACCAGCGG TAGCCAGCTC CCCACCACGG GCAAGCAGGT CGCCAACGCA CCGAAAAACA TGCTCAACCT CGGAGTGGGC TATGACGACG GTCTCTACTA TGCCGGCGTA AACAGCCGCT ATGTTGGCTC GTTCTACGGC GACATGACCA ATGACGAGAA GATAGGCGGA CGTACCGTTT TCGATCTCAG CGCCGGCGTC TATCTGCCAG TGGATAAGAA GATCGTGAAA AGCGCCACCT TACGCTTTGG CGTCAACAAC CTGTTCGACA AAGAGTATCT CGACTCTGCG CGCTCCGTGA GCTTCAACTC AAGATCGTAC AACGGCGTAT CGGCAGGCAC ACCGTTTTAC AACGTTGGGG AAGAGCGCAC CTTCAGCGCC TCACTGGAAG CCACGTTCTA A
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Protein sequence | MKPFKLSGVC LSVVGALLAG SALAEDATNV GTINVQGQPL GAGLMVQEDS AKSRSTVTKD ALDKMPAAGN AIDKLKYTAG LNVSSNDASG LSGVSYTMRG MSADQVGLSS DGIPVNDSGD YAVYPNGMGD PENLEQIFVT QGSSEMDGPH IGASGGNIGL VSHRPAKDFG GFVKQTFGSN NLSKTFARLE TGKHNGFSSW LSYSYTDSDK WRGAGYSRAD KVEWNGLYEH ENGHSSSLIV KYNQQDTINY STLSKRQFEQ NGRKMDYATT PVYNSRGQIS QYYKINRNNF ETLNVTFTQK LQLRDNLALT LQPYYFSTNG GSHGSGSASV LSATSDRAGN YDLSNLTSNT YYRPSWTETW RPGITTKLKW DLNDEHSLDI GYWFERARQR QTQPFIPIKS DGTPANISGK PGDADQITDA NGKVVQGRNQ FTVTPAHKIW VQDTWFFSPE WTFSGGLAYQ HVERDGTNLG SLYNVAEKKN KKYHEFLPSF NAAYRINTEN QVFYNITRNM RTPPNYVLYN VGDSINTKPE LSWNQELGWR FQDEDMLLSA SLFFIQFTDR QISSRDANGD YEMINAGKVE NKGLELEWSG KLPHNFNYFA AYTYTDTEQK NNLATSGSQL PTTGKQVANA PKNMLNLGVG YDDGLYYAGV NSRYVGSFYG DMTNDEKIGG RTVFDLSAGV YLPVDKKIVK SATLRFGVNN LFDKEYLDSA RSVSFNSRSY NGVSAGTPFY NVGEERTFSA SLEATF
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