Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0806 |
Symbol | |
ID | 8131731 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 940928 |
End bp | 941614 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644864090 |
Product | transcriptional regulator, GntR family |
Protein accession | YP_003016396 |
Protein GI | 253687206 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.459024 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATACCT CTTTTCAGAT CAACAACAAC GAACCAGTCA ACCAGCAAAT TTATCGCGTA CTGCGCAAAG ACATTGTGGA ATGCAATATT CCGCCGGGTA AGCTGCTGTC TGAAAAAGAA ATTTCTGTGC GTTTTGATGT GTCTCGCCAG CCGGTTCGAG AGGCTTTTAT CAAGCTGGCA GAGGCCGGTC TGGTGCAGAT CCTGCCGCAG CGCGGCACGT TTGTCATGAA GATCTCCGAG CAACGCGTGG CGGATGCCCG CTTTATCCGT CAGGCGCTGG AATGCGCGAT TGTACGTCGG GCGGCAGAAA TGGTGACGGA TGAACAACTG CTGACGCTGG AGCACAATTT ACGCCGTCAG GAACTGGCTG CGCAGAATGA ACAAGTGCGC GAGTTCCTTA GCCTCGATGA CAGCTTCCAT CAGCTTCTGA CGCAGATTGC CAACTGTCCG CTGGCGTGGG AAACCATCGA ATCGATCAAA GCGACAATGG ACCGCGTACG TTTTCTCAGC CTGAGCCAGG TTTCTCCGCC AGTCAGTCTG ATCCAACAGC ACTATCTGAT TTTTAGCGCC CTGAAAGCGC GGGATCCCGA TGCGGCGGAA AAAGCGATTC GTGAACATTT GCAGGAAATG ATCTATTCAA TCACGCCGAT TGCGCAACAG AATAGCGATT GGTTCGAGCA CGCCTGA
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Protein sequence | MDTSFQINNN EPVNQQIYRV LRKDIVECNI PPGKLLSEKE ISVRFDVSRQ PVREAFIKLA EAGLVQILPQ RGTFVMKISE QRVADARFIR QALECAIVRR AAEMVTDEQL LTLEHNLRRQ ELAAQNEQVR EFLSLDDSFH QLLTQIANCP LAWETIESIK ATMDRVRFLS LSQVSPPVSL IQQHYLIFSA LKARDPDAAE KAIREHLQEM IYSITPIAQQ NSDWFEHA
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