| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0789 |
|---|
| Symbol | |
|---|
| ID | 8131714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 923221 |
|---|
| End bp | 923754 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644864073 |
|---|
| Product | transmembrane pair domain protein |
|---|
| Protein accession | YP_003016379 |
|---|
| Protein GI | 253687189 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4125] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.149154 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCCA TGGTCATGGC GAAAATTGAC CAGCAACTTG CAATAAATAA AAGTGAATGT
GTTATGCAGA ACAAAACCAG CAAAACCTTA CGTGAGCGTG TGTACCATGC GGTGGGCTTT
GAACTGATCG CGTTGTCGAT CTGTGCGCCG GCGGGTGCCT GGCTGCTGAA TAAGCCACTC
TTCGATATGG GGGCACTGGC CATCATGCTG TCCAGCGTCG CGATGATCTG GAATATGATC
TACAACACGA TATTCGATCG TCTGTGGCCT GCGGATCGCG TTAAGCGTCG GCTGCCAGTT
CGTATCGCCC ACGCGCTGGG GTTTGAAGGC GGTTTTATCC TGATTGGTTT GCCGCTGGCG
GCGTGGATGC TGAACGTCAC GTTGTGGCAG GCGCTGATGG TGGAGATCGG CTTCTTCCTG
TTCTTCCTGC CGTACACCGT GGTGTATAAC TGGGCCTACG ACACCTTGCG GGAACGCATT
GTGAACCGCC GTTGCCACGT TCGTCAGGTG TCGACCAGCT CCCGTCTGCG CTAA
|
|---|
| Protein sequence | MPSMVMAKID QQLAINKSEC VMQNKTSKTL RERVYHAVGF ELIALSICAP AGAWLLNKPL
FDMGALAIML SSVAMIWNMI YNTIFDRLWP ADRVKRRLPV RIAHALGFEG GFILIGLPLA
AWMLNVTLWQ ALMVEIGFFL FFLPYTVVYN WAYDTLRERI VNRRCHVRQV STSSRLR
|
|---|
| |