| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0786 |
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| Symbol | |
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| ID | 8131711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 919895 |
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| End bp | 921538 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644864070 |
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| Product | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit |
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| Protein accession | YP_003016376 |
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| Protein GI | 253687186 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.141985 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAATA AACCCTTCTA TTACCAAGAT CCTTTTCCAC TCAGTAAAGA TGACACCGAA
TATCGCCTGC TGAGCAGCGA CTTTGTTTCT GTCGCACAAT TTGAAGGTCA GGACATCCTG
AAGATCGAGC CAGCCGCGTT GACCCTTCTG GCCCAGCAAG CCTTCCACGA TGCCTCTTTC
ATGCTCCGCC CCGCTCACCA GCAGCAAGTT GCCGATATTC TTAACGATCC GGAAGCCAGC
GAAAACGATA AATACGTTGC CCTGCAATTC CTGCGCAACT CAGAAATTTC CGCCAAGGGC
ATTCTGCCGA CCTGTCAGGA TACCGGTACG GCGATCATCG TCGGTAAAAA AGGCCAGAAC
GTCTGGACCG GCGGTAACGA CGCCGAAGCG CTGTCCAAGG GCGTATACAA CACGTTCATT
GAAGACAACC TGCGCTACTC ACAGAACGCT GCGCTGGACA TGTACAAAGA GGTCAACACT
GGCACCAATC TGCCTGCGCA AATTGACCTC TACAGTACTG AAGGCGAAGA CTATAAATTC
CTGTTCGTCA CCAAAGGCGG CGGTTCCGCT AACAAAACCT ATCTGTATCA GGAAACTAAA
GCGCTGTTGA CGCCGGGTAA GCTGAAAAGC TTCCTGATCG AGAAAATGCG TTCTCTGGGC
ACCGCGGCCT GTCCGCCGTA CCACATCGCG TTTGTGATTG GCGGCACCTC GGCAGAAACC
ACGCTGAAAA CCGTTAAGCT GGCATCGACC AAGTACTACG ATGAACTGCC GACCGAAGGC
AATGAACACG GTCAGGCGTT TCGTGATGTC GCGCTGGAGC AGGAAATTCT GGAAGCCGCG
CGCGATCTGG GTCTGGGCGC GCAGTTCGGC GGTAAATATT TTGCGCACGA CGTGCGGATT
ATCCGCCTGC CACGCCACGG CGCATCTTGC CCTGTCGGTA TGGGCGTGTC CTGTTCTGCT
GACCGTAACA TCAAAGGCAA GATCAACCGC AAGGGGATCT GGCTGGAGCA GTTAGAGCAG
AATCCGGGTA AATATATCCC TGAGCATCTG CGTGAAACGG GCGAAGGCGA TGCGGTCAAA
ATCGACCTGA ACCGTCCGAT GGCCGAGATC CTGAAGACGC TGTCGCAGTA TCCGGTATCC
ACCCGTCTTT CCCTGACCGG CACCATCATC GTGGGCCGTG ACATTGCTCA CGCCAAGCTG
AAAGAGCGTC TGGATAACGG CGAAGGCCTG CCGCAGTACA TCAAAGATCA CCCGATCTAT
TACGCGGGTC CGGCGAAAAC ACCAGAGGGC TACCCGTCCG GCTCGTTAGG CCCTACCACC
GCTGGCCGTA TGGATTCCTA TGTCGATTTA CTGCAGGCCA ACGGCGGCAG CATGATCATG
CTGGCAAAAG GCAACCGTAG CCAGCAGGTG ACCGACGCGT GCCATAAACA CGGTGGTTTC
TACCTCGGCA GCATCGGCGG CCCGGCAGCG ATTCTGGCAC AGAACAGCAT TAAGAGCCTG
ACCTGTGTGG AATACCCGGA GCTGGGAATG GAAGCCATCT GGAAAATCGA AGTTGAAGAT
TTCCCAGCCT TTATTCTGGT CGATGATAAA GGCAACGATT TCTTCCAGGT GATTCAGAGT
GCCAAGTGCG TGAAATGCGG TTAA
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| Protein sequence | MSNKPFYYQD PFPLSKDDTE YRLLSSDFVS VAQFEGQDIL KIEPAALTLL AQQAFHDASF
MLRPAHQQQV ADILNDPEAS ENDKYVALQF LRNSEISAKG ILPTCQDTGT AIIVGKKGQN
VWTGGNDAEA LSKGVYNTFI EDNLRYSQNA ALDMYKEVNT GTNLPAQIDL YSTEGEDYKF
LFVTKGGGSA NKTYLYQETK ALLTPGKLKS FLIEKMRSLG TAACPPYHIA FVIGGTSAET
TLKTVKLAST KYYDELPTEG NEHGQAFRDV ALEQEILEAA RDLGLGAQFG GKYFAHDVRI
IRLPRHGASC PVGMGVSCSA DRNIKGKINR KGIWLEQLEQ NPGKYIPEHL RETGEGDAVK
IDLNRPMAEI LKTLSQYPVS TRLSLTGTII VGRDIAHAKL KERLDNGEGL PQYIKDHPIY
YAGPAKTPEG YPSGSLGPTT AGRMDSYVDL LQANGGSMIM LAKGNRSQQV TDACHKHGGF
YLGSIGGPAA ILAQNSIKSL TCVEYPELGM EAIWKIEVED FPAFILVDDK GNDFFQVIQS
AKCVKCG
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