| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0785 |
|---|
| Symbol | |
|---|
| ID | 8131710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 918092 |
|---|
| End bp | 919684 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644864069 |
|---|
| Product | anaerobic nitric oxide reductase transcription regulator |
|---|
| Protein accession | YP_003016375 |
|---|
| Protein GI | 253687185 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.210842 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGA TTAACTATTG TCTTAATGAC ACAGATTTGT CATTAGGACA CGCCATGACG
CTCTCCATCA ATGCCCTTGC CCGCATCGCT ATCGAGCTGC AAATGGGGCT ATCGAATCAG
GATCGTTTTC AGCGCTTGAT TAACAGCCTG CGCCAGCTGC TGCGCTGTGA TGCCTCGGCG
CTGTTACGCT ACGAAAATCA GCTGTTTCGC CCGCTGGCGA TCGACGGTCT GGCGCCGGAC
GTGTTGGGGC GACGCTTTCG TCTGTCCGAT CATCCCCGTC TGGAGGCCAT TGCCCGTGCG
GGTGACGTGG TACGCTTTCC GGCGGACAGC CAGCTTCCCG ATCCGTATGA CGGCCTGATC
CCCAGTCAGG AGGATCTTAA GGTGCACGCC TGCGTCGGCC TGCCGCTGTT TGCCAATCAG
AACCTGATCG GGGCGCTGAC CGTGGACGGT ATGGATCCCT GCCAGTTCGA CCATTTTAGT
GACGAAGAAC TGCGGCTGGT GGGGGCGATG GCGGCGGCAG CGCTGAGTAA CGCGCTGCTG
ATGGAACGCC TTGAGCGGCA GTTGCCTGCG CCAGTGCGTG CCGAAAGTCC TGCGGCGGAA
AGCGTGGAGG AAATGGTGGG GCTGTCGGAG CCGATGTTGC GGCTAAAGAA AGAGGTCGAT
ATCGTCGCGG GCTCCGATCT GAACGTGCTG ATTATGGGAG AAACTGGCGT TGGTAAAGAG
CTGGTGGCGC GCGCGATTCA TCGTGGTTCC AGCCGGGCAA TTCATCCTCT GGTGTACCTG
AACTGTGCCG CGCTGCCGGA ATCGGTCGCA GAGAGTGAAC TGTTTGGCCA TGTGAAGGGC
GCATTTACTG GTGCAATCCA TCACCGCACT GGCAAGTTTG AAATGGCGGA TAACGGCACG
CTATTTCTGG ATGAGATTGG CGAACTGTCG CTGACGCTAC AGGCTAAGCT GCTGCGCGTA
TTGCAGTATG GCGATCTCCA GCGCGTGGGG GATGACAGCA GCCTGAAAGT GAACGTACGC
GTGCTCGCAG CGACTAACCG CGATCTGCGG CAGGCGGTGC TGGATGGTGC TTTCCGTGCC
GATTTGTTCC ACCGTTTGAG CGTGTTTCCG CTATCTGTAC CGCCGCTACG TGAGCGTAGT
CAGGATGTGG CGCTGTTGGC CGGGTTCTTC TGTGAGCGTA GCCGCGTGCA ACTGGGGCTG
GCGCGACTGG CGTTGACGGC AGACGCGGGC GCGCTGTTGG AACAATACGA CTGGCCGGGG
AATGTGCGCG AGCTGGAACA CGCTATTTAT CGTGCCACCG TGTTGGCGAG AGCAGGGCAG
GAATCGGGTG AGGTGCTGTT AGGCCCTGAA CATTTCAATC TTGAACTTTA CTCCCAGCCT
GTTCATACCC CCGCAGGAGC CCCGAGTGCT ACCGACAGCG TACCGGATTA TTTCATCAGC
GGCGGCTTGC GAGAGGCAAC GGACGACTAT CAGCGTCGGA TCATCCAACA CACGCTGGCG
CGTCATGAGG GCAACTGGTC ATCCTGCGCG AGAGAACTGG AAATAGACAG CGGCAACCTA
CACCGTCTGG CGAAGCGGCT GGGTATCAAA TAA
|
|---|
| Protein sequence | MTLINYCLND TDLSLGHAMT LSINALARIA IELQMGLSNQ DRFQRLINSL RQLLRCDASA
LLRYENQLFR PLAIDGLAPD VLGRRFRLSD HPRLEAIARA GDVVRFPADS QLPDPYDGLI
PSQEDLKVHA CVGLPLFANQ NLIGALTVDG MDPCQFDHFS DEELRLVGAM AAAALSNALL
MERLERQLPA PVRAESPAAE SVEEMVGLSE PMLRLKKEVD IVAGSDLNVL IMGETGVGKE
LVARAIHRGS SRAIHPLVYL NCAALPESVA ESELFGHVKG AFTGAIHHRT GKFEMADNGT
LFLDEIGELS LTLQAKLLRV LQYGDLQRVG DDSSLKVNVR VLAATNRDLR QAVLDGAFRA
DLFHRLSVFP LSVPPLRERS QDVALLAGFF CERSRVQLGL ARLALTADAG ALLEQYDWPG
NVRELEHAIY RATVLARAGQ ESGEVLLGPE HFNLELYSQP VHTPAGAPSA TDSVPDYFIS
GGLREATDDY QRRIIQHTLA RHEGNWSSCA RELEIDSGNL HRLAKRLGIK
|
|---|
| |