Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0770 |
Symbol | |
ID | 8131695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 901465 |
End bp | 902664 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644864054 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_003016360 |
Protein GI | 253687170 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0433625 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATCAC GATTTTTTAC ACGACGCCGT ACGACGATCG CGCTTGGTGT TATCGCCGCT GCCGTACTTA TTCATCTGTT TTTCAACAAG CCAGCACCCG CGCCAAGCAC GATGACCACC GCCGCAGAGA TTGCGGATCT CGAACAGACG GTACTCGCTG ACGGCAAAAT TGAGGCGCAG AAACAGGTCA GCGTCGGTGC TCAAGCCTCG GGACAAATCA AAGCGCTGCA CGTCGAACTC GGCGATAAGG TCACAAAAGG GCAATTGATC GCCGAGATTG ATGACCTCAC CCAGCAGGAC ACGTTAAGAA ATGGCGAAGC GGCGCTAAAA AACATTCAGG CTCAGCGAAC CGCCAAACTG GCGGAATTGC GTAACAACGA ATTGAGCTGG CAGCGTCAGC AAATGTTGAT GAAACGCGGC GTTGGCGCTC AGGCCGACTA CGATAGCGCG AAAGCCACGC TCGACGCCAC CCGAGCCAAT ATCGATGCGC TGGACGCCCA GATCGTTCAG GCACAAATTA CCGTCAACAC CGCCAAGGTT AACCTCGGTT ATACCCAGAT TCGTTCGCCG ATGGATGGCA CCGTGGTGGC GATTCCGGTT GAAGCGGGCC AAACGGTCAA CGCCATCCAG ACCACGCCGA CCATTGCCAA AGTCGCCAAT CTGGACACCA TGACCATCAA GGTGAAGATT TCAGAAGCCG ACGTCGTCAA AGTGAAAACC GGCATGCCCG TGTGGTTCAG TATTCTGGGC GAACCGAATA AGCGTTACGA AGCCACGCTA AGCTCGATTG AACCCGCGCC GGACTCTATC AATACGGATT CAACCACGAC GTCATCCAGT TCCAGCAGCA GCACCAGTTC CTCATCCAGC ACCGCGATCT ATTACAACGG CCTGTTTGAT GTGAAGAACC CTGACGGCGT ATTGCGCATT TCCATGACGG CACAGGTGTA TATTCTGCTG TCTTCGGTGA AAAATGCCAT TGTCGTCCCA GCGACGGCAT TAACCTCGCG CAATGGCATG TGGTACGTGC AGGTCATGAA TGCGAACAAG AAGATCGAAT CGCGGCTGGT CACGCTCGGC CTCAATGATA ACGTGCGCAC CCAGATTCGT TCGGGGCTCA GCGTTGGGGA GCAGGTGGTT GTCAGCCCGT CGTCCGGTGA TGTCGCGTCC ACGCATCCCG GCCCACCGAT GGGGATGTAA
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Protein sequence | MQSRFFTRRR TTIALGVIAA AVLIHLFFNK PAPAPSTMTT AAEIADLEQT VLADGKIEAQ KQVSVGAQAS GQIKALHVEL GDKVTKGQLI AEIDDLTQQD TLRNGEAALK NIQAQRTAKL AELRNNELSW QRQQMLMKRG VGAQADYDSA KATLDATRAN IDALDAQIVQ AQITVNTAKV NLGYTQIRSP MDGTVVAIPV EAGQTVNAIQ TTPTIAKVAN LDTMTIKVKI SEADVVKVKT GMPVWFSILG EPNKRYEATL SSIEPAPDSI NTDSTTTSSS SSSSTSSSSS TAIYYNGLFD VKNPDGVLRI SMTAQVYILL SSVKNAIVVP ATALTSRNGM WYVQVMNANK KIESRLVTLG LNDNVRTQIR SGLSVGEQVV VSPSSGDVAS THPGPPMGM
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