| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0764 |
|---|
| Symbol | |
|---|
| ID | 8131689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 894616 |
|---|
| End bp | 895515 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644864048 |
|---|
| Product | Dyp-type peroxidase family |
|---|
| Protein accession | YP_003016354 |
|---|
| Protein GI | 253687164 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2837] Predicted iron-dependent peroxidase |
|---|
| TIGRFAM ID | [TIGR01413] Dyp-type peroxidase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACCAA TTCAAAGCGG TATTTTATTG GAACACCGCC GTTTTGCCAT TTTTATGGAA
GCGATGATTC AGGGAGAGTT TGATGCTATC CGGCAGGGAT GCAAAAAATT CTGTCAGACA
TTACAAGCGT TACAGCAGCA GTATCCCGAC GCGGGATTAG GCGCGGTGCT GGCATTTGGC
AACGATGTCT GGCGCGATCT GGACTGCAAC CGCGGCGCAG AGGAACTCAA ACCCTTTACG
CCGCTGGGCA ACGGGCTCGC TCCTGCCACG CAGCGAGATC TGCTGATCCA TATTCAATCG
CTGCGCCATG ATGTGAACTT CACACTGGCT CAGGCGGCGC TGGCCGCGTT TGGTGGGGCG
ATTCGTATCG AGGAAGAGAC GCACGGCTTC CGCTGGGTGG AAGATCGTGA TTTAAGCGGC
TTTGTCGACG GCACGGAAAA CCCACAGGGC GATGCTCGTC ATGCTGTGGC GATTATCCCT
GAAGGCCAAC CGGATGCGGG TGGCAGTTAT GTGTTTACCC AACGTTGGGA ACACAATCTG
AAGCAGCTCC AGCGTTTTAG CGTGGAGCAG CAGGAACAGA TGATCGGGCG TACGAAGCAG
GATAATGAAG AGCTGTCTTC CGATGAGCGC CCTGTAACGT CGCATCTCAG CCGTGTGGAT
TTAAAGGAAG ACGGCAAGGG GCTGAAGATT CTGCGTCAGA GCCTGCCTTA TGGCACCGCG
AGCGGTAAAA ACGGGCTCTA CTTTATTGCC TACTGCGCAC GTCTGCATAA CATTGAGCAG
CAGTTGCTGA GCATGTTCGG CGATCGTGAC GGTAAACGTG ATGAGATGCT GCGCTTTACG
CGTGCCGTCA GCGGTAGCTA CTTCTTCGCG CCTTCTCTGG ATCAGCTGTT GTCGCTGTAA
|
|---|
| Protein sequence | MTPIQSGILL EHRRFAIFME AMIQGEFDAI RQGCKKFCQT LQALQQQYPD AGLGAVLAFG
NDVWRDLDCN RGAEELKPFT PLGNGLAPAT QRDLLIHIQS LRHDVNFTLA QAALAAFGGA
IRIEEETHGF RWVEDRDLSG FVDGTENPQG DARHAVAIIP EGQPDAGGSY VFTQRWEHNL
KQLQRFSVEQ QEQMIGRTKQ DNEELSSDER PVTSHLSRVD LKEDGKGLKI LRQSLPYGTA
SGKNGLYFIA YCARLHNIEQ QLLSMFGDRD GKRDEMLRFT RAVSGSYFFA PSLDQLLSL
|
|---|
| |