| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0736 |
|---|
| Symbol | |
|---|
| ID | 8131661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 856908 |
|---|
| End bp | 858173 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644864020 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003016326 |
|---|
| Protein GI | 253687136 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA AGAATAAAGT ATCTACCCTA TTTGCAGTTT CATTCCTCAC GCTGGGTTTA
TCGAGTCATA GCCTGGCAGC TGAAGTCACC GTGTGGGCCT GGGATCCTAA TTTCAATGTT
GCGGCAATGC ATGAGGCATC GTCGATATAT AAAAAAGCCG ATCCAAGTTT CAGTCTAAAA
GTGATCGATT CAGGTAAAGA AGATATTGAG CAGAAATTAA ATACCATGTT GGCTTCAGGG
GTTAAAAACT CCCTTCCTGA TATTGTGCTG ATTGAAGATT ATAATGCTCA GAAATATCTT
CAGGCTTATC CTGACTCGTT TATCCCATTA CAGGATGCCA TCGATTATAG CCAGTTTGCG
CCTTATAAAA CGAAAGTGAT GACGGTAGGG AACAAGGTAT ACGGTGTCCC TTTTGATTCC
GGCGTAGCGG GAATGTTCTA TCGACTCGAT TATCTGGAGG CTGCCGGATA TAAAGAGAGC
GATATGGTGA ATATTACCTG GGATAAATAT ATTGAAATCG GTAAACAGGT AAAAGCGAAA
ACCGGCGTTG ATATGCTGAC CTATGATATG AACGATGTGG TGCTTCCTCA TATTATGATG
CAGTCCGGTG GAGAATGGTT CTTCGATAAT CAGGGGCAAC TCAATCTCAC CAAAAACAAT
GCACTGAAAG AAACATTAAA AACGATTAAA GCGATTAACG ACGCGAAAAT TGCCCGCCCT
ATCTCTGGTT GGTCGAGTTT TGTCGGGAGT TTTAATGCCG GGAAATCGGC AAGTGTAGTT
TCTGGTGTAT GGGTGATTGG TTCAATTAAA AGCGCTGAAG ATCAGAAAGG AAAATGGCGT
GTCGCGCCGA TTCCACGGCT GAACCTCGAC AAAGCGGTAC ATGCCTCCAA TCAGGGGGGA
TCGAGCTGGT ATGTCTTAAA GGGCGGTAAA AATACTAAAC AGGCGATCGA GTTTTTGCAG
AAAACCTTCG CGGCAGATAG CAATATGTAT CAAACCCTGT TGGTTGATCG TGGTGCGCTT
GCCACCTTCC TTCCAGCCAC TTCCGGCCCT GCTTACGCGG TACAGGATCC GTTCTTTGGT
GGGCAACCCG TGTTCGCTGA TTTTTCTAAA TGGGTGACTG AAATCCCACA GGTTTCCTAC
GGTATGTATA CCCAGGAAGT TGATAACGCC ATTGCTGCTG AAATACCTGC ATTACTGAAA
GGCGATTCTG TCGATGACGT TTTAAAACGC GCCGAAACGA CATTAAAAAA TCAGATTATG
CAGTAG
|
|---|
| Protein sequence | MKIKNKVSTL FAVSFLTLGL SSHSLAAEVT VWAWDPNFNV AAMHEASSIY KKADPSFSLK
VIDSGKEDIE QKLNTMLASG VKNSLPDIVL IEDYNAQKYL QAYPDSFIPL QDAIDYSQFA
PYKTKVMTVG NKVYGVPFDS GVAGMFYRLD YLEAAGYKES DMVNITWDKY IEIGKQVKAK
TGVDMLTYDM NDVVLPHIMM QSGGEWFFDN QGQLNLTKNN ALKETLKTIK AINDAKIARP
ISGWSSFVGS FNAGKSASVV SGVWVIGSIK SAEDQKGKWR VAPIPRLNLD KAVHASNQGG
SSWYVLKGGK NTKQAIEFLQ KTFAADSNMY QTLLVDRGAL ATFLPATSGP AYAVQDPFFG
GQPVFADFSK WVTEIPQVSY GMYTQEVDNA IAAEIPALLK GDSVDDVLKR AETTLKNQIM
Q
|
|---|
| |