| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0673 |
|---|
| Symbol | |
|---|
| ID | 8131597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 779009 |
|---|
| End bp | 779860 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644863958 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003016264 |
|---|
| Protein GI | 253687074 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.126045 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGATC TGGTAGCAAA ACTTAAGCGC GGCGCGCCCA TGCTGGCACT GCTGATTGTC
AGCACCGTGC TGGTGGGATG CGGCAGCTCG ATGGCGATTA AAGGCAGTAA AGATGAAGGC
CTGCGTCTGG CACGCCTGCT GCGCGATCAG GGACGTGTTG AGGCCGCGAC GGAAGTGTAC
GCGCGTCTCG ACAGCCGCGA TGCGCTGAAA GGCGCAGAGA TGCTGGAGTA TGCCAGCGTC
GCAGCGCTGG CGCGTTCACC GCAGCAAACG CTGGAACTGT ACGGGCGAGC ACGTCAGGCG
TTGGGCGGCG ATACCAACAA AATGACGCCG GAAGAAGCGC TGGCGGTGTG TCTGGGAATG
GGGCGTGCAC AGCTGGCATT AGGACGTAAT TCGATGGCGC AAGCCGACTT TGCCTGTGCG
CTAAAAGCAC AGCCGAACGA TGCAGGCGCT CTTAACGGCA TGGGTGTAGT GATGGATGCC
TCAGGTAAAC ACGCAGAAGC GCGCCAGCTG TTTGAAAAAG CGTTGCAGAT AAACCCGGCA
GATGTCGCGG CACTCAACAA TCTGGCGCTC TCATGGCTGG CAAGCGGCAA CGCGGATAAA
GCCATTTCTC TGCTGCGCTC GGTGGATGAG AGTAATGCAA CCGGCAGACT GAATCTGGCG
CTGGCCTACC TTTCTGGCGG CAGAGAGGAT GACGCACGTT CGGCGTTGGC GACCATTGCA
CAGCCACAGC GTATTGATGG CTTGATCGAC GAACTGCATC AGCGTCTACA GCAGATGCAA
CAGGATAAAT CCCGTGGCGA AGCGCTGCTT CTGTCCAGCC GTCAACGCCT GCAATTGAGT
TCGCCTGAGT AA
|
|---|
| Protein sequence | MVDLVAKLKR GAPMLALLIV STVLVGCGSS MAIKGSKDEG LRLARLLRDQ GRVEAATEVY
ARLDSRDALK GAEMLEYASV AALARSPQQT LELYGRARQA LGGDTNKMTP EEALAVCLGM
GRAQLALGRN SMAQADFACA LKAQPNDAGA LNGMGVVMDA SGKHAEARQL FEKALQINPA
DVAALNNLAL SWLASGNADK AISLLRSVDE SNATGRLNLA LAYLSGGRED DARSALATIA
QPQRIDGLID ELHQRLQQMQ QDKSRGEALL LSSRQRLQLS SPE
|
|---|
| |