Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0670 |
Symbol | |
ID | 8131594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 775545 |
End bp | 776945 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644863955 |
Product | type II secretion system protein E |
Protein accession | YP_003016261 |
Protein GI | 253687071 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.811515 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATTCGCA AGAATAACCT GCAAAAAAGT GAAGCAGGAA AAAGCACGCC TCAGCCTGCG CCTGCTGCCA ATGTGGCAGA ACTGAAAACG CGTCCGGCTG CGGAGAACCG CACACAGCCT GCGGCGAGCT CTGCGTCTGG GTCCGCTCCA GCCGCGCGCC AGACGGACAG CCGAACCAGC CAGCGCCGGA TTATCCGCGC ACAGCTCTAC GATCAGATCG ACGCAGGTAA AGCGGCGATG ATGGGGCGTG ACAAGCTGCT GGTGCAGATC GAGACGGTGA TCCGCCGCAT CTGTGATGAG CAGCGCTTAC AGCTTTCCCG GCAGGAAGAG GAAGCCATCG CTGCCGAAAT GCTGGACGAG ATGACCGGGA TCGGGCCGAT CCAGCCGCTG CTGTCGGATG ACACGGTCAA CGATATTCTG GTTAACGGTG CGGGACAGGT GTTTGTCGAG CGCTTTGGCA AACTGGAACT GTCGCCGATT ACCTTCATTG ATGAAGAACA TGTATTTAAC ACCGCGCAGC GTATTGCTGC CGCAGTGGGG CGCCGCATCG ATGAAGCCAG TCCGATGGTG GATGCGCGTC TGCCTGACGG TAGCCGCGTC AACGTCATCA CCTATCCGTT GGCGATTGAC GGCACCACGA TCTCGATCCG TAAATTTATG CGCCGCAACC TGTCGCTGGA AATGCTGGCA GAGCGCCGCT GCATGTCCTA CGCGATGGCG GATGTGCTGA ACAAAGCGAT GCAGGCGCGC GTTAACGTGA TCGTCTCCGG CGGAACGGGC GCGGGTAAAA CCACCTTGCT GAATGCGCTG TCGCAGAAGA TCGGCAGCAC CGATCGCATC ATCACCATTG AAGATGCCGC CGAACTGCAA TTGCAGCAGG AGCACGTGGT GAGACTGGAA ACGCGTCCTG TCAGCGCCGA AGGCACCGGC CGCGTCGATC AGCGCGATCT GATGCGTAAC GCCCTGCGTA TGCGGCCCGA CCGCATCATT CTGGGCGAGG TGCGCGGCGG CGAGAGCTTT GACATGTTGC AGGCGATGAA CACCGGCCAC GACGGTTCGC TGTGTACGGT ACACGCCAAC ACCTCGCGCG ATGCGATACA GCGTCTGGAA AACATGGTGA TGATGGCGAA CATGCAACTG CCACTGATGG CGATCCGCCG CCAGATCGCC AGCGCGGTTC ACCTGATCGT GCAGATCGAA CGTATGCGCG ACGGCATGCG CCGCGTGGTA TCCATCACCG AAGTGTGTGG CATGGAGAAC GAAGTGATCC AGCTTCAGGA TCTGTTCAGC TTCAACATTC AGGGGATGGA TGGACAGGGT CTGTTGACGG GGGAATATGT TCAGCACATT CAGCGCCCGC AGTTCTACAG CGACAAATCG CACCTGTTTG ATGCGCAGTA A
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Protein sequence | MIRKNNLQKS EAGKSTPQPA PAANVAELKT RPAAENRTQP AASSASGSAP AARQTDSRTS QRRIIRAQLY DQIDAGKAAM MGRDKLLVQI ETVIRRICDE QRLQLSRQEE EAIAAEMLDE MTGIGPIQPL LSDDTVNDIL VNGAGQVFVE RFGKLELSPI TFIDEEHVFN TAQRIAAAVG RRIDEASPMV DARLPDGSRV NVITYPLAID GTTISIRKFM RRNLSLEMLA ERRCMSYAMA DVLNKAMQAR VNVIVSGGTG AGKTTLLNAL SQKIGSTDRI ITIEDAAELQ LQQEHVVRLE TRPVSAEGTG RVDQRDLMRN ALRMRPDRII LGEVRGGESF DMLQAMNTGH DGSLCTVHAN TSRDAIQRLE NMVMMANMQL PLMAIRRQIA SAVHLIVQIE RMRDGMRRVV SITEVCGMEN EVIQLQDLFS FNIQGMDGQG LLTGEYVQHI QRPQFYSDKS HLFDAQ
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