| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0667 |
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| Symbol | |
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| ID | 8131591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 772123 |
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| End bp | 773559 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644863952 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_003016258 |
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| Protein GI | 253687068 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.703933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATGT TTTCGCTGTT TTTGAAATCG GACTTTCGGG GTACGTGCAA ACGATTGCTG
GCTGCTTGCC TGTTTAATGC GGTATTGCCT GTCACGCTAA CGACGATGAT GTTGCCTGCG
ACCACACTAG CTGCTGGGGT ATCTACAGCG CCTATCACTG ATGAAGTTCA CCTAACGGTC
AATCAGGGAC GGTTACTCCA ACTTGCTGAT ACACCGGATA GCGTGCTGGT GGCCGATCCG
AATATCGCCA GTTTTGAACT GCCTTCGCCG GGTAACCTGT TCGTTTACGC CAAAAGTGTC
GGTGTCACCA CGCTCTATGC GATGGATGAA AATGGCAATG TCATCAATGC CATTCGTCTG
GTGTCTGAAC ATGATTTGAA AGCGCTGGGT GAACGCATGA AGCGTGAATT CCCCGGTGCG
GATATTCAAC TGGAAGCCTC GATTCCTAGC GGTGTCATTG TGCGCGGCAG CGTGGATACC
CCGCAGGATG CCAAACGCGT CATCGACAGC ATACAGGCTT ACATCAGCGC GTCCTCGGGC
GGGCAGGGCG GTGGTGGAGG CGGTGGCGAA AAATTGCCGG GCTCCAGCGA ATCCTCCGGC
AAGGTGATCA ACCAACTGAA AATTAAAACG CCTTCGCAAA TCAATATTCA GGTGCGTGTG
GTGGAAGTGT CCCGCAAGTT GACCAGCGAA CTGGGCTTCA ACTGGGCGGC ATCGCTGAGC
ACCGGCAGCG GGAATATGAG TGCGGGCAGC GGTTCGCGTC TGAATCTGTT CAACGCTACA
ACCGGACGAT TTTCTAACCC AACAGATTCT GGTTTCCTGA ACTTCGGCCG CTCCAGACTG
AGCGGATTGT TAACCGCCAT GAACCAGCAG GGCATGGCGA CCGTATTGGC TGAGCCCAAC
CTGACGGCGA TGTCAGGAGA AACGGCGGCG TTTGCTGCGG GTGGCGAAGT GCCGATCGTT
TTGATCACCA ACAACAGCGT CAGCATCGAT TACAAATCCT ACGGCGTGAT TCTGCGCATG
ACGCCAACGC TGCTGTCTGC TAACCGCATC AGCCTGCACA TTGCACCTGA AGTCAGTGAA
CTCACGGACG TCGGTTCCGT ACAGTTGGAA GGCGGATCGC GTATTCCGGC CTTAACGGTA
CGTCGTGCGG ATACCACGGT AGAGCTGGCC AGCGGACAGA GCTTTGCACT GGCGGGGATG
TTGCGTAGCG CTGGCAGCCA GACAATCAAC GGCGTGCCAG GGCTGAGTAG CGTGCCGATG
TTTGGCCGCC TGTTTGAAAG CGAAGCCACC AGTCAGGAAG AAACGGAATT GGTGATTATC
GCGACCGCTT ATGTGGTTGA ACCGGTTAAT GCAGGCGATC TTCAGACGCC GGGGCAAGGC
GTAAAAATGC TGGATTCGTC CATGCCACGT TCTGCATCTA TCGGCTATCT CTACTGA
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| Protein sequence | MTMFSLFLKS DFRGTCKRLL AACLFNAVLP VTLTTMMLPA TTLAAGVSTA PITDEVHLTV
NQGRLLQLAD TPDSVLVADP NIASFELPSP GNLFVYAKSV GVTTLYAMDE NGNVINAIRL
VSEHDLKALG ERMKREFPGA DIQLEASIPS GVIVRGSVDT PQDAKRVIDS IQAYISASSG
GQGGGGGGGE KLPGSSESSG KVINQLKIKT PSQINIQVRV VEVSRKLTSE LGFNWAASLS
TGSGNMSAGS GSRLNLFNAT TGRFSNPTDS GFLNFGRSRL SGLLTAMNQQ GMATVLAEPN
LTAMSGETAA FAAGGEVPIV LITNNSVSID YKSYGVILRM TPTLLSANRI SLHIAPEVSE
LTDVGSVQLE GGSRIPALTV RRADTTVELA SGQSFALAGM LRSAGSQTIN GVPGLSSVPM
FGRLFESEAT SQEETELVII ATAYVVEPVN AGDLQTPGQG VKMLDSSMPR SASIGYLY
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