| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0655 |
|---|
| Symbol | |
|---|
| ID | 8131579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 758256 |
|---|
| End bp | 759179 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644863940 |
|---|
| Product | lipid A biosynthesis palmitoleoyl acyltransferase |
|---|
| Protein accession | YP_003016246 |
|---|
| Protein GI | 253687056 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1560] Lauroyl/myristoyl acyltransferase |
|---|
| TIGRFAM ID | [TIGR02207] lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.603489 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA AGCAAACTTT TACCAGGGCA TTACTCCACC CACGCTATTG GACGACTTGG
TTCGGCCTTG GCGTGCTGTT TTTATTAGTT CAACTTCCTT ACCCGCTGCT GATGAAAATC
GGGAGCAATG CGGGTCGCCT GTCCCGCGTT TTTCTTAAAC GTCGAGTGTC GATTGCCAGA
CGTAACCTTG AATTATGCTT CCCTACGATC TCTGACGACG AAAAAGAAGC GATGATCGAC
AGCAACTTTG CGTCGCTTGG AATGGCATTG GTCGAAACGG GCATGGCCTG GTTCTGGTCC
GATCGTCGCG TGCGTCACTG GTTTGATGTT TCGGGACTGG AGCATTTACA TCAGGCTACA
GCAAAAGGCC AGGGCGTGAT GGTGATTGGT ATTCACTTTA TGTCGCTGGA ACTGGGCGGC
AGGGCGATGG GGCTATGTCG GCCGATGATG GCGATGTACC GTCCGCACAA TAATAAAGCG
ATGGAAATGG TGCAAACCTG GGGACGTTCT CGTTCGAACA AGGCGATGAT CGACCGTAAA
GATCTGCGTG GCATGGTGCA AGCACTGAAA CGCGGGGAAG CTGTTTGGTT CGCGCCCGAT
CAGGATTACG GCCCTAAAGG CAGCGTGTTT GCCCCGTTCT TTGCAGTGAA AAATGCGGCG
ACGACCAGTG GCACGTACAC GATCAGTCGT CTGGCAAAAC CGGCGATGAT GACGACGGTG
CTGATTCGTA AGCCTGATGC CTCTGGCTAC CAGCTGGTGA TTCAGCCCGA ATTACAGGAT
TACCCTTATC ATGATGAACA GGCGGCGGCG TGTTATATGA ATAAGGTGAT TGAGAAAGAA
ATCATGCGTG CGCCTGAGCA GTATCTCTGG CTTCACCGTC GCTTTAAAAC GCGCCCGGCT
GGGGAAGTGT CGCTCTACGC CTGA
|
|---|
| Protein sequence | MKIKQTFTRA LLHPRYWTTW FGLGVLFLLV QLPYPLLMKI GSNAGRLSRV FLKRRVSIAR
RNLELCFPTI SDDEKEAMID SNFASLGMAL VETGMAWFWS DRRVRHWFDV SGLEHLHQAT
AKGQGVMVIG IHFMSLELGG RAMGLCRPMM AMYRPHNNKA MEMVQTWGRS RSNKAMIDRK
DLRGMVQALK RGEAVWFAPD QDYGPKGSVF APFFAVKNAA TTSGTYTISR LAKPAMMTTV
LIRKPDASGY QLVIQPELQD YPYHDEQAAA CYMNKVIEKE IMRAPEQYLW LHRRFKTRPA
GEVSLYA
|
|---|
| |