Gene PC1_0648 details

Gene Information

• Locus tag: PC1_0648
• Symbol: prfB
• ID: 8131571
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 751146
• End bp: 752244
• Gene Length: 1099 bp
• Protein Length: 365 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 644863932
• Product: peptide chain release factor 2
• Protein accession: YP_003016239
• Protein GI: 253687049
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1186] Protein chain release factor B
• TIGRFAM ID: [TIGR00020] peptide chain release factor 2

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTGAAA TTAATCCGGT AAAAAACCGC ATTCAGGATC TGTCTGAACG TAGTGCCGTT 
CTTAGGGGGT ATCTTTGACT ATGATGCCAA GAAAGAACGC CTCGAAGAAG TAAACGCCGA 
ACTGGAGCAG CCTGATGTCT GGAATGAGCC TGAACGTGCT CAGGCATTGG GAAAAGAGCG 
CTCCTCGCTG GAAGCCATCG TAGATACCAT CGATCAACTG ACTCAGGGTC TGGAAGATGT 
GGCCGGTCTG CTTGAGCTCG CGGTGGAAGA AGACGACGAA GATACGTTCA ATGACACCAC 
GGTAGAACTG GACGCGCTGG AAAATAAATT AGGCCAGCTC GAATTCCGTC GCATGTTCTC 
CGGCCAGTAC GACAGTGCGG ATTGTTACCT GGATATTCAG GCAGGTTCTG GCGGTACGGA 
AGCGCAGGAC TGGGCCAGCA TGTTGGTGCG TATGTACCTG CGTTGGGCGG AAGCCAAAGG 
GTTTAAAACC GAAATTATTG AAGAGTCAGA CGGTGACGTG GCTGGTACAA AATCTGCCAC 
CATCAAGATC ATCGGTGACT ATGCATTTGG CTGGCTGCGC ACCGAAACCG GCGTGCACCG 
TCTGGTACGT AAGAGTCCGT TCGATTCCGG TGGCCGCCGT CATACCTCAT TCAGCTCCGC 
GTTCGTTTAC CCGGAAGTTG AGGACGATAT CGATATCGAA ATCAATCCGG CAGACCTGCG 
TATTGACGTT TACCGCGCAT CCGGTGCGGG TGGTCAGCAC GTTAACCGGA CAGAATCTGC 
GGTGCGTATT ACCCACATGC CTACCGGTAT TGTCACGCAG TGTCAGAACG ATCGTTCCCA 
GCATAAAAAC AAAGATCAGG CGATGAAACA GCTGAAAGCC AAGCTGTACG AGTTTGAGAT 
GCAAAAGAAA AATGCTGAGA AACAGGCGAT GGAAGACAAC AAATCTGATA TCGGCTGGGG 
CAGCCAGATT CGTTCCTATG TTCTGGATGA TTCGCGCATC AAAGACTTAC GTACCGGAGT 
GGAAACACGT AACACTCAGG CCGTACTGGA TGGCGATCTG GACAAATTTA TTGAAGCAAG 
TTTAAAAGCG GGGTTATAA 

 

Protein sequence

MFEINPVKNR IQDLSERSAV LRGYLDYDAK KERLEEVNAE LEQPDVWNEP ERAQALGKER 
SSLEAIVDTI DQLTQGLEDV AGLLELAVEE DDEDTFNDTT VELDALENKL GQLEFRRMFS 
GQYDSADCYL DIQAGSGGTE AQDWASMLVR MYLRWAEAKG FKTEIIEESD GDVAGTKSAT 
IKIIGDYAFG WLRTETGVHR LVRKSPFDSG GRRHTSFSSA FVYPEVEDDI DIEINPADLR 
IDVYRASGAG GQHVNRTESA VRITHMPTGI VTQCQNDRSQ HKNKDQAMKQ LKAKLYEFEM 
QKKNAEKQAM EDNKSDIGWG SQIRSYVLDD SRIKDLRTGV ETRNTQAVLD GDLDKFIEAS 
LKAGL