| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0645 |
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| Symbol | xerD |
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| ID | 8131568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 747523 |
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| End bp | 748422 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644863929 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_003016236 |
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| Protein GI | 253687046 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.241995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAAGAAC ACGATCAGGC ACTTATCGAA CAGTTTCTCG ATGCGCTGTG GCTGGAAAGA
AATCTGGCCG AGAATACGCT GGCGTCTTAT CGGTTGGATC TGCGCACGCT CGCGGAATGG
CTTGCACATC ATGATAACGA CTTATTGCAG GCGCAGGCGC TCGATCTTCA GGCGTTTCTC
GCCGATAGGG TTGATGGCGG CTACAAGGCG ACCAGTTCGG CCCGTTTGTT GAGCGCGATG
CGTCGCTTCT TCCAGTACCT TTATCGGGAA AAGCTGCGCA GCGACGATCC CAGTGCGGTG
CTATCGTCCC CGAAACTGCC GCAGCGTCTA CCCAAAGATT TGAGCGAGGC GCAGGTTGAT
GCGTTGCTTA ACGCACCAAG CATTGAACAG CCGCTGGAAT TACGCGATAA GGCCATGCTT
GAGGTATTGT ATGCGACGGG GCTGCGTGTT TCTGAGTTGG TCGGTTTGAC GATGAGCGAT
GTCAGCCTGC GGCAGGGCGT GGTTCGCGTG CTGGGAAAAG GCAATAAAGA ACGCCTGGTG
CCACTCGGTG AAGAAGCGGT GTACTGGATC GAGTATTATC TGGAACATGG TCGCCCGTGG
CTGCTGAATG GGCAAACGCT CGATGTGCTT TTTCCCAGCA ATCGAGCACG GCAAATGACG
CGCCAGACGT TCTGGCACCG TATTAAGTAT TATGCGGTAC TGGCGTCCAT CGACAGCGAA
AAGCTCTCGC CGCACGTCTT GCGTCACGCG TTTGCTACCC ATTTATTGAA CCACGGCGCG
GATTTACGGG TCGTACAGAT GCTCTTGGGG CACAGCGATC TTTCTACGAC GCAGATTTAC
ACCCATGTGG CGACGGAGCG GCTGAAACAG CTTCACCAGC AGCACCATCC GCGCGCATAG
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| Protein sequence | MQEHDQALIE QFLDALWLER NLAENTLASY RLDLRTLAEW LAHHDNDLLQ AQALDLQAFL
ADRVDGGYKA TSSARLLSAM RRFFQYLYRE KLRSDDPSAV LSSPKLPQRL PKDLSEAQVD
ALLNAPSIEQ PLELRDKAML EVLYATGLRV SELVGLTMSD VSLRQGVVRV LGKGNKERLV
PLGEEAVYWI EYYLEHGRPW LLNGQTLDVL FPSNRARQMT RQTFWHRIKY YAVLASIDSE
KLSPHVLRHA FATHLLNHGA DLRVVQMLLG HSDLSTTQIY THVATERLKQ LHQQHHPRA
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