Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0645 |
Symbol | xerD |
ID | 8131568 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 747523 |
End bp | 748422 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644863929 |
Product | site-specific tyrosine recombinase XerD |
Protein accession | YP_003016236 |
Protein GI | 253687046 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.241995 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAAGAAC ACGATCAGGC ACTTATCGAA CAGTTTCTCG ATGCGCTGTG GCTGGAAAGA AATCTGGCCG AGAATACGCT GGCGTCTTAT CGGTTGGATC TGCGCACGCT CGCGGAATGG CTTGCACATC ATGATAACGA CTTATTGCAG GCGCAGGCGC TCGATCTTCA GGCGTTTCTC GCCGATAGGG TTGATGGCGG CTACAAGGCG ACCAGTTCGG CCCGTTTGTT GAGCGCGATG CGTCGCTTCT TCCAGTACCT TTATCGGGAA AAGCTGCGCA GCGACGATCC CAGTGCGGTG CTATCGTCCC CGAAACTGCC GCAGCGTCTA CCCAAAGATT TGAGCGAGGC GCAGGTTGAT GCGTTGCTTA ACGCACCAAG CATTGAACAG CCGCTGGAAT TACGCGATAA GGCCATGCTT GAGGTATTGT ATGCGACGGG GCTGCGTGTT TCTGAGTTGG TCGGTTTGAC GATGAGCGAT GTCAGCCTGC GGCAGGGCGT GGTTCGCGTG CTGGGAAAAG GCAATAAAGA ACGCCTGGTG CCACTCGGTG AAGAAGCGGT GTACTGGATC GAGTATTATC TGGAACATGG TCGCCCGTGG CTGCTGAATG GGCAAACGCT CGATGTGCTT TTTCCCAGCA ATCGAGCACG GCAAATGACG CGCCAGACGT TCTGGCACCG TATTAAGTAT TATGCGGTAC TGGCGTCCAT CGACAGCGAA AAGCTCTCGC CGCACGTCTT GCGTCACGCG TTTGCTACCC ATTTATTGAA CCACGGCGCG GATTTACGGG TCGTACAGAT GCTCTTGGGG CACAGCGATC TTTCTACGAC GCAGATTTAC ACCCATGTGG CGACGGAGCG GCTGAAACAG CTTCACCAGC AGCACCATCC GCGCGCATAG
|
Protein sequence | MQEHDQALIE QFLDALWLER NLAENTLASY RLDLRTLAEW LAHHDNDLLQ AQALDLQAFL ADRVDGGYKA TSSARLLSAM RRFFQYLYRE KLRSDDPSAV LSSPKLPQRL PKDLSEAQVD ALLNAPSIEQ PLELRDKAML EVLYATGLRV SELVGLTMSD VSLRQGVVRV LGKGNKERLV PLGEEAVYWI EYYLEHGRPW LLNGQTLDVL FPSNRARQMT RQTFWHRIKY YAVLASIDSE KLSPHVLRHA FATHLLNHGA DLRVVQMLLG HSDLSTTQIY THVATERLKQ LHQQHHPRA
|
| |