| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0604 |
|---|
| Symbol | |
|---|
| ID | 8131524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 704745 |
|---|
| End bp | 707240 |
|---|
| Gene Length | 2496 bp |
|---|
| Protein Length | 831 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644863885 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_003016195 |
|---|
| Protein GI | 253687005 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTGA TTCCATTTTT CTCAACACAG CGCACTCCTT CCAAACTGGC GATTGCCGTT
CATCTGTTAC TGTGCGGTGC ACCGATTTTT GCGCATTCCA CCGCAACCGC CGCAGAAACA
GCAGCCGTGG CGGCAACCAA AACCTACGCA ATTCCTGCCG GACCGCTTAA CCAGCAGCTA
AACCAGTTTG CTGCCCAGTC GGGCGTTTAT CTGGTCGGCG ATGCACAGTT GGCGACAGGA
AAAACCGGGC CGTCCCTGCA AGGGAATTAC AGCGTCGATG GCGGGTTTTC GGCTCTGCTA
GCCGGAAGCG GACTTCAGGT GATTCCGCAG CCTAACGGCG CCTGGCGCTT ACAGAGAATA
CCGCAGGAAG ATGAGATGCT GGTCGTAGCG GGGGTCAATC GCAACGGCGT GACCGAAGGC
ACTCAGTCCT ACACCACGCG CAGCATGAAC ACCGCGACAC AGCTGAACCT GTCGCCGCGA
GAAACGCCGC AGTCGGTGAG CGTCGTGACA CGCCAGCGTA TGGACGATCA GAATATGACC
TCGCTGGATG AGGCCATGAA GCAAACCACC GGCATTAACG TGGTCAATCA GAACAGCTAT
CAGGTGAAAT ACGAATCACG CGCCTTCGTG ATGGATAATA TCAAGGAAGA CGGCGTTAAC
TTCTCCAGCC AGAACAGCGT CTCCAACATG GGCGCGGTTC AGTCCTCCAG TGAATCGCCC
GATCTGGCGA TCTATGACCG CGTGGAGATC CTGCGCGGGG CGTCCGGTCT GTCACAAGGG
AATGGCGAGC CGGGCGGCAC CGTTAATCTG GTGCGCAAGC AGCCGACTCA CAACTTTCAG
GCCTCCGGCA GCGTTGGCGC GGGCAGTTGG GATAATTACC GCAGTGAACT CGATGTCTCT
GGGCCGCTGA ACGACGATGC CAGCCTGCGC GGCCGTCTCG TTGGCGTTTA TCAGGATAAA
CAAAGCTTTA AAGATTACGA ACACAGTGAA AGAAAGGTGC TGTTCGGTAC GCTGGCCTAC
GACCTGACGC CGTCCACCAC GGTAACTGGC GGCATCAACT GGCAAAAGAC CCGAGGCGTG
CCTGATGTGT ATGGCGTCCC GTTCGCCACC GATAAAAGCA GCCTGAACCT GCCACGATCC
ACCTATCTGG GCGCAAGCTG GAACCGCATC GAATTTGAAA AAATTAACCC ATTTGTCGAA
CTGGAACACC ACTTCGATAA TGACTGGACG CTGAAAACCG CGCTGAACTA TATCCATTCC
CGCGCGGCAA GTAGCTATAT CGGTATCATA AACGGTACAA GCGGCGTGAA TCCGGCAACG
GGAAACTCGG TGCTGAACAA TAACCTGCGC TACGACAATA AGGCCGAACA GTGGGGCTAC
AACCTGAGCC TGAACGGTCC GTTTGAGCTG TTGGGGCGCA GTCACGAACT GGTGGTGGGC
GGTGATTATC AGAAAGAGAA CTTCGATAAT AACCACATCC GCATCAACAA CACCAGCACC
GTGAATATCT TCAACTGGCA GCCTAATTCG CTGGCAGAAC CGGACTGGTC AAATACGAGT
CTCTACAACA ACCACTATAA CGACCGCTTT AATCTGTATC AGCGCGGCGC GTTTGCCACG
GCCAGATTCG AACTGGCCGA TGACTGGAAG CTGATTCTGG GCGGCCGCTA CAGCGCCTAC
AGCTATGACG AGTATTTCAC TAACCATCTC CGTAATACGT CCTCACTCAG CAGCCTGCAT
GCCAGCAATG AGTTTGTACC TTACGGCGGC CTGCTGTGGG ACTTCGCCGA TAACTACACC
TGGTACCTGA GCTACGCCGA AATCTACAAG CCACAGAGCG AAAAAGACCG CAACGGCAAC
CTGCTGCCCG CCATTACCGG CACCAACTAT GAAACCGGCA TAAAGGGCGA GTTCTTTGAT
GGCGATCTGA ATACCTCGTT GGCCCTGTTC CGCATCATTC AGGAAAATCG GGCAATGACC
GTCGCAAATA GCTCGGTTTG CCTGATCGGC ACAAGTTGCT CCCAGCCCGA AGGCAAGGTA
CAAAGCCAGG GGGTAGAACT GGATGTCACG GGGAAACTGG CTGAAGGCTG GCAGGTTCAG
ACGGGTTATA CCCTGACCAA CAGTAAATAT CTTGAAGGCA GCGCGAGTGA AAGAGCCGCG
CAGTTTAGCC CGCGTACGCC AAAGCACATG TTCAAGCTCT ACACCTCATA CAATCTGCCG
GGTGAACTGA ACCAATGGAC GATTGGCGCG GGTATGACGG CACAAACTGA GACGCAAACC
TATCCAAACC GCACTTTTGG CCTGTCTCAG GGCGGCTATA CGCTGTTTAA CGCCAATGTC
CGCTATCAGT ACAGCAAGAA CCTGAGCTTC AATCTGGTGG GCAATAATCT GACGGATAAA
ACCTACTTCT TAAACCTGAA CAACCGCCAT CTTAGCGGCA ACAACTATTA CGGCGATCCG
CGTAATTTCA TGTTGACCGC GAAGTGGAAT TTCTAA
|
|---|
| Protein sequence | MALIPFFSTQ RTPSKLAIAV HLLLCGAPIF AHSTATAAET AAVAATKTYA IPAGPLNQQL
NQFAAQSGVY LVGDAQLATG KTGPSLQGNY SVDGGFSALL AGSGLQVIPQ PNGAWRLQRI
PQEDEMLVVA GVNRNGVTEG TQSYTTRSMN TATQLNLSPR ETPQSVSVVT RQRMDDQNMT
SLDEAMKQTT GINVVNQNSY QVKYESRAFV MDNIKEDGVN FSSQNSVSNM GAVQSSSESP
DLAIYDRVEI LRGASGLSQG NGEPGGTVNL VRKQPTHNFQ ASGSVGAGSW DNYRSELDVS
GPLNDDASLR GRLVGVYQDK QSFKDYEHSE RKVLFGTLAY DLTPSTTVTG GINWQKTRGV
PDVYGVPFAT DKSSLNLPRS TYLGASWNRI EFEKINPFVE LEHHFDNDWT LKTALNYIHS
RAASSYIGII NGTSGVNPAT GNSVLNNNLR YDNKAEQWGY NLSLNGPFEL LGRSHELVVG
GDYQKENFDN NHIRINNTST VNIFNWQPNS LAEPDWSNTS LYNNHYNDRF NLYQRGAFAT
ARFELADDWK LILGGRYSAY SYDEYFTNHL RNTSSLSSLH ASNEFVPYGG LLWDFADNYT
WYLSYAEIYK PQSEKDRNGN LLPAITGTNY ETGIKGEFFD GDLNTSLALF RIIQENRAMT
VANSSVCLIG TSCSQPEGKV QSQGVELDVT GKLAEGWQVQ TGYTLTNSKY LEGSASERAA
QFSPRTPKHM FKLYTSYNLP GELNQWTIGA GMTAQTETQT YPNRTFGLSQ GGYTLFNANV
RYQYSKNLSF NLVGNNLTDK TYFLNLNNRH LSGNNYYGDP RNFMLTAKWN F
|
|---|
| |