| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0587 |
|---|
| Symbol | truB |
|---|
| ID | 8131507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 684635 |
|---|
| End bp | 685579 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644863868 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_003016178 |
|---|
| Protein GI | 253686988 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.25247 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGTC CTCGTCGCCG TGGCCGTGAT GTACACGGCG TATTGCTATT AGATAAGCCG
CAGGGCGTGT CGTCTAATGA TGTTTTACAG AAGGTAAAAC GGATTTTTAA CGCTAACAGA
GCGGGCCACA CGGGGGCATT GGATCCATTA GCCACCGGCA TGTTGCCGAT TTGCCTTGGG
GAAGCGACGA AATTTTCCCA ATACCTGCTG GATTCAGATA AACGCTACCG TGTTATTGCT
CGTCTTGGGC AACGCACCGA CACCTCTGAT GCCGATGGCA ACGTGATTGA AGAACGGGCG
ATTGGTTTTT CTGCTACGGA ACTGGAGCAG GCGCTGGAGG GCTTTCGTGG TACCACGCAG
CAAGTGCCAT CCATGTACTC AGCGCTGAAA TACCAGGGGC GTAAGCTGTA TGAGTATGCT
CGTCAGGGGC TGACGGTTCC GCGTGAAGCA CGTGAAATCA CCGTGTACGA ACTGCAGTTC
ATTCGCTGGG AAGGCGATGA GCTGGAGTTA GAGATCCATT GCTCTAAAGG GACATACATC
CGTACCATTA TTGATGATTT GGGCGAAAAG CTGGGCTGTG GCGCGCATGT GATTTACCTG
CGTCGTTTGC AGGTGGCTAC GTATCCTATC GAAAGAATGG TAACGCTGGA GCAGTTGGCC
ACGTTGGTCG AGCAGGCTCA GGCACAAGAG CTTTCGCCTT CGCTGAGTCT CGATCCGCTG
CTTATGCCGA TGGAAAGCCC GGTTATTGAT TTTCCTGAAG TGAATTTGAC GCCCGTTGTC
GCCGGTTATT TGAAGCTGGG GCAGCCCGTT CAGGCCGCGA ATACGCCGTT GAACGGTATG
GTGAGAATCA CCGAAGGCGA CGCGCATACG TTTATCGGTA TGGGTGAAAT CGACGGCGAT
GGCCGCGTTG CGCCACGGCG TCTGGTTGTT GAGTATCCGG TGTAA
|
|---|
| Protein sequence | MSRPRRRGRD VHGVLLLDKP QGVSSNDVLQ KVKRIFNANR AGHTGALDPL ATGMLPICLG
EATKFSQYLL DSDKRYRVIA RLGQRTDTSD ADGNVIEERA IGFSATELEQ ALEGFRGTTQ
QVPSMYSALK YQGRKLYEYA RQGLTVPREA REITVYELQF IRWEGDELEL EIHCSKGTYI
RTIIDDLGEK LGCGAHVIYL RRLQVATYPI ERMVTLEQLA TLVEQAQAQE LSPSLSLDPL
LMPMESPVID FPEVNLTPVV AGYLKLGQPV QAANTPLNGM VRITEGDAHT FIGMGEIDGD
GRVAPRRLVV EYPV
|
|---|
| |