| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0562 |
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| Symbol | |
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| ID | 8131480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 649687 |
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| End bp | 651120 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644863841 |
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| Product | D-alanyl-D-alanine carboxypeptidase/endopeptidase |
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| Protein accession | YP_003016153 |
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| Protein GI | 253686963 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00835796 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTTTT CATCGATTGT TACCGGACTT GCCTGCGCTT TTGTTCTGCA TGCCAATGCA
GCTTCTGTTG AGGATCATCG CCAATATTTA CCAGACGGTG CCAATCTGGC GCTATTGGTA
CAAAAAGTTG GCTCAACAAC ACCCAGCATG GCCTTCAATA GCCAGCAAAT GGCGCTTCCC
GCCAGTACAC AAAAGGTGAT AACCGCATTA GCTGCATTAC TGCAATTGGG TCCAGATTAT
CGATTCGTCA CTACGATGGA AAGCCATGGC CCTGTCACTA GCGGTATTCT GAACGGTAAC
CTCATCGTAC GGTTTAGCGG TGATCCAACA CTTAAGCGCC AGCAAATACG GAACATGGTG
CAGGAATTAA GAAAGCGCGG GATAAAGGAA ATCGCCGGGG ATGTGCTGAT CGACACTTCG
GTATTCGCCA GTCACGATAA AGCCCCGGGC TGGCCGTGGA ACGACATGAC ACAGTGCTTC
AGCGCCCCTC CGGGTGCCGC GATTGTCGAT CGCAACTGCT TCTCCGTCTC ACTCTACAGT
GCGCCTAAAG CAGGTGATAA TGCGTTTATC CGCGTCGCCT CCTATTATCC AGTCCAAATG
TTCAGCGAGG TCCGCACGCT GGCTAAAGGG TCAGCCGATG CACAATACTG CGAACTGGAT
GTCGTGCCGG GGGAACTGAA TCGCTTTACG CTTACAGGCT GTTTGACTCA ACGCACAGAG
CCGCTTCCGC TGGCGTTCGC CATTCAGGAT GGGGCCAGCT ATGCCGGCGC TATTGTTAAA
GATGAGCTAC AGCAGGCAGA TATACGCATA AAAGGCAGTC TTCGTCGTCA GACTCAGCCA
GGAGCTGCGG GGAGTGTGCT GGCTCAGACA CAGTCTGCTC CACTGCACGA TCTGCTCACC
ATCATGCTGA AAAAATCGGA CAACATGATT GCCGATACGG TTTTTCGCAC CATTGGACAC
GAGCGATTTA GCGTCCCAGG AACGTGGCGT GCAGGCGCAG ATGCAGTGCG TCAGATCCTT
CGTCAAAAGG CAGGGGTAGA TTTAGGAAAC AGCATTGTTG TTGATGGTTC CGGCCTGTCA
CGACACAACC TGATCTCGCC AGAAACGATG ATGCAGGTAT TGCAGTACAT CGCACAGCAC
GATAATGAAT TGAATTACAT CACTATGCTT CCGCTTTCCG GCTATGACGG CACGTTGCGT
TATCGTGGTG GTCTGCATGA GGCTGGCGTT GATGGCAAGG TGTCGGCAAA AACAGGGGCG
CTGCAGGGGG TATACAATCT GGCAGGCTTT ATTACCACAG CGAGCGGTCA GCGTATGGCA
TTCGTCCAGT TCCTTTCGGG CTATGCCGTG CCGCCAGAAG ACCAACGCGC ACGCCGTGTC
CCTCTGGTGA GATTTGAAAG CCGTCTCTAT AAAGACATTT ATCAGAGCAA TTAA
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| Protein sequence | MRFSSIVTGL ACAFVLHANA ASVEDHRQYL PDGANLALLV QKVGSTTPSM AFNSQQMALP
ASTQKVITAL AALLQLGPDY RFVTTMESHG PVTSGILNGN LIVRFSGDPT LKRQQIRNMV
QELRKRGIKE IAGDVLIDTS VFASHDKAPG WPWNDMTQCF SAPPGAAIVD RNCFSVSLYS
APKAGDNAFI RVASYYPVQM FSEVRTLAKG SADAQYCELD VVPGELNRFT LTGCLTQRTE
PLPLAFAIQD GASYAGAIVK DELQQADIRI KGSLRRQTQP GAAGSVLAQT QSAPLHDLLT
IMLKKSDNMI ADTVFRTIGH ERFSVPGTWR AGADAVRQIL RQKAGVDLGN SIVVDGSGLS
RHNLISPETM MQVLQYIAQH DNELNYITML PLSGYDGTLR YRGGLHEAGV DGKVSAKTGA
LQGVYNLAGF ITTASGQRMA FVQFLSGYAV PPEDQRARRV PLVRFESRLY KDIYQSN
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