| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0469 |
|---|
| Symbol | |
|---|
| ID | 8131385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 543096 |
|---|
| End bp | 544604 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644863747 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_003016061 |
|---|
| Protein GI | 253686871 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAAGG GTCGGAAACT ATTTAGCCTT AGCGCCATCG TGCTAGCCGC CAGCGGCTGC
GCCGTGACCA CCCAGCCGAT CAGCAAGGTC GAAAGCGGGC AACGCAGCCA GCAGGACCGA
GTCGCCATGT TCAGCCAGCA GGAGCCCGTC ACGGCACCGA TTACGCTGTA TGATGCGATG
GCACGCGCGC TGAAATACAA CCTCGAATCA CGCTTAAAAG TGATGGAATA TGCACTGAGT
CAGCAGCAAC TGGAACTGGC ACGTTACGAT ATGCTGCCCA AGATCGCGGC ATCGGCAGGC
TATGTGGGGC GTAATAATAT GAGCGCTTCC AGCAGCCGCA GCGTGGAAAC GGGACGAACC
TCTCTGGAAC CGTCCACCTC GCAGGATCGT GACCGCGATG TGGCCGATCT GACCATGGTA
TGGAACGTGC TCGATTTTGG CGTCAGCTAC GTGACCGCCC AGCAAAAATC GGATCAGCGC
TGGATTGCCG AAGAGCGTAA ACGCAAAGTC GTGCACACCA TCCTGCAAGA CGTGCGCTCC
GCCTACTGGC GCGCCGTGGC TGCCGAACGC TTGTTGGGGC AGATTGATGG CCTGATCGCC
CGTGTCAACA CAGCACGTGA CGCGAGTGAG CACATGTCGT CACAGCAGAT TGGCGATCCC
ATCGAAGCAC TGAGCTATCA ACGCGCGCTG ATCGACGCCA CCCGCCAATT GGAAGAACAG
CGTCGTGCGC TGTCGCTCGC CAAGACTGAG CTGGCGACTT TGATGAACCT GCCATTGGAT
ACGGCCTACA AACTCGCGTT GCCACAAAGT GGTGACGAAA CCGTACCGCA GTTGAATGTC
GATGTGAAGG TGCTGGAAGA AGCGGCGCTG GTCAGTCGCC CAGAACTGCG CGAGCAGGAT
TATCAGGTGC GAATTCATGC CGCTGAAACC CGCAAAGCGC TGCTGCGTAT GCTGCCCGGC
GTGGAAATCA GCGCAGGTGG CCACTATGAC AGCAACTCCT TCCTGGTCAA CAACAGCTGG
GCTGACGTCG GCGTGAAAGC GACCTGGAAC CTGTTCAATC TGTTGTCTGG CCCAGCCGCG
CGTAAAGCCG CTCAGGCTAA CGAATCCGTG TCGGAAATGC AGCGTCAGGC AATGTCATTG
GCGATTATGG CGCAGTTGTA CATCGCCCGA GCCAACTTCA ATGAAGCGCA GCGACAATAT
AAAACCAGTT CAGAATTACG CAATCTTGAC ACTAAAATCG TCGAACAACT GAGAAACCGC
TATAAGGCTA ACAGCATTGG TGAACTACAG TTGATTCAAG GCGAGCTGAA CGCCCTCAAT
GCCAGTTTGC GTCAGGATCT GGCCTATGCA GAACTACGTA ATTCCTACGG CCAGATATTC
TCGACAATCG GATTGGATTT GCTGCCGAAA TCACTGCCAT CCAATAGCCT TGCAGATATC
AGCCAGTCGC TGCGTCAATC TGATATCAAC TGGCAGCAGG GTAAAATCAG TACCTTACAA
TCATTCTGA
|
|---|
| Protein sequence | MLKGRKLFSL SAIVLAASGC AVTTQPISKV ESGQRSQQDR VAMFSQQEPV TAPITLYDAM
ARALKYNLES RLKVMEYALS QQQLELARYD MLPKIAASAG YVGRNNMSAS SSRSVETGRT
SLEPSTSQDR DRDVADLTMV WNVLDFGVSY VTAQQKSDQR WIAEERKRKV VHTILQDVRS
AYWRAVAAER LLGQIDGLIA RVNTARDASE HMSSQQIGDP IEALSYQRAL IDATRQLEEQ
RRALSLAKTE LATLMNLPLD TAYKLALPQS GDETVPQLNV DVKVLEEAAL VSRPELREQD
YQVRIHAAET RKALLRMLPG VEISAGGHYD SNSFLVNNSW ADVGVKATWN LFNLLSGPAA
RKAAQANESV SEMQRQAMSL AIMAQLYIAR ANFNEAQRQY KTSSELRNLD TKIVEQLRNR
YKANSIGELQ LIQGELNALN ASLRQDLAYA ELRNSYGQIF STIGLDLLPK SLPSNSLADI
SQSLRQSDIN WQQGKISTLQ SF
|
|---|
| |