Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0458 |
Symbol | |
ID | 8131374 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 521057 |
End bp | 522334 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644863736 |
Product | nucleoside transporter |
Protein accession | YP_003016050 |
Protein GI | 253686860 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1972] Nucleoside permease |
TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACTCG TTATGAGTCT CATCGGCATG CTTGTTCTGA TTTTTTTCGC GGTTATTTTG TCCAGTAATC GTAAAGCGAT CAGATTGCGC ACCGTAGTTG GTGCTTTCGT TATTCAGATT GGTATCGGTG CGTTGGTGCT GTATGTGCCA GTAGGACGCA AAATTCTGGA GGGATTGACG GGCGGTGTAG CAAACGTTAT CGCCTACGGA AACCAAGGGG TTTCATTCAT TTTTGGCGGT CTGGTTTCCG ACAAAATGTT CGAAATCTTC GGCGGTGGCG GGTTTGTTTT CGCATTCCGT GTATTACCGA TCATCGTCTT TTTCTCTTCC CTTGTAGCGG TACTGTACTA CATGGGGGTG ATGCAGTGGG TCATCCGTTT ATTAGGCGGT GGGTTACAGA AACTGTTGGG AACGTCCCGT ACTGAGTCGC TCTCTGCCAC GGCTAATATT TTTGTCGGCC AAACAGAAGC ACCGCTGGTG GTTCGCCCGT ATATCGCCAA CATGACGCGT TCAGAGTTGT TTGCGGTGAT GTGCGGCGGA TTAGCCTCCA TTGCGGGGTC TGTGATGGCA GGCTATGCCC AGATGGGCGT GCCGCTGGAC TATCTGATTG CGGCTTCCTT CATGGCTGCG CCGGGTGGAT TGCTATTTGC CAAACTGATG GTGCCGGAAA CGGAAAAAAC GCACGATCAT GACGAGATGG TTGGGTTTGT TGATGAAGAC GATCGCCCGG CTAACGTCAT TGATGCAGCG GCAAGCGGTG CGGCGTCCGG TATGCAACTG GCGCTGAATG TGGGCGCGAT GTTGCTGGCT TTTGTCGCTT TGATTGCTCT TCTTAATGGC ATTCTGGGTG GTATCGGTGG CTGGTTTGAT TACCCGCAAC TGTCAATGGA ATTGATGCTG GGGTGGATAT TCTCACCTGT CGCCTTCTTA ATCGGCGTAC CGTGGCATGA AGCAACGGTA GCGGGTTCGT TTATTGGGCA AAAGCTGATC GTTAACGAGT TCGTCGCTTA CATGAATTTC AGCGAGTACC TGAAAGCGGA TGATGTGGTT GCTGCTGCGG GCTTGCAGGT TCTGTCGGAT CATACCAAAG CTGTGATTTC GTTCGCGCTG TGCGGCTTTG CTAACCTTTC GTCTATTGCT ATCCTTATTG GAGGTTTGGG CAGTATGGCA CCGAGTCGGC GTCAGGATAT TGCCCGTTTG GGTTTGAAGG CGGTCGCGGC AGGTACGCTT TCTAACCTGA TGAGCGCCTG CATCGCAGGG TTCTTTTTGT CTCTGTAG
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Protein sequence | MQLVMSLIGM LVLIFFAVIL SSNRKAIRLR TVVGAFVIQI GIGALVLYVP VGRKILEGLT GGVANVIAYG NQGVSFIFGG LVSDKMFEIF GGGGFVFAFR VLPIIVFFSS LVAVLYYMGV MQWVIRLLGG GLQKLLGTSR TESLSATANI FVGQTEAPLV VRPYIANMTR SELFAVMCGG LASIAGSVMA GYAQMGVPLD YLIAASFMAA PGGLLFAKLM VPETEKTHDH DEMVGFVDED DRPANVIDAA ASGAASGMQL ALNVGAMLLA FVALIALLNG ILGGIGGWFD YPQLSMELML GWIFSPVAFL IGVPWHEATV AGSFIGQKLI VNEFVAYMNF SEYLKADDVV AAAGLQVLSD HTKAVISFAL CGFANLSSIA ILIGGLGSMA PSRRQDIARL GLKAVAAGTL SNLMSACIAG FFLSL
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