| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0441 |
|---|
| Symbol | |
|---|
| ID | 8131356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 503878 |
|---|
| End bp | 504357 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644863719 |
|---|
| Product | type VI secretion system effector, Hcp1 family |
|---|
| Protein accession | YP_003016033 |
|---|
| Protein GI | 253686843 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAATT CTATTTTTAT GAAGATAACG GGAAAAATTC AGGGATTGAT CTCTGAAGGA
TGTTTAAGTA TCGACTCGGT AGGAAATAAA CATATCTCTG GTCACGAAGA TGAAATTTTT
GTTTATGCGA CAAACTACGA CCTATCAAGA GATCGACACG TTAACCATCA CCCCTTTTCC
GTGACTAAAG TCGTTGATAA ATCGACACCT CTTCTACTCA CCAGCATCGC CAATAATGAG
CTATTGGAGT GCGAGTTAAG GTATTACCGC ACGTCTGCCA GCGGAACCCA AGAGAACTAT
ATGACAATAA CATTGAGAGA TGCGTCTATT GTTAACCTCT CAAATCAAAA CCCCAATTCA
TTGACCCATA ACGATATGCA GCCATTTGAA ACCCTCAGCC TGCGTTATGA GAGTATTACC
TGCCAGCACA ATATCGCAGG TACATCGGGA TATAGCATAT TAACTGAAAA TATGTACTGA
|
|---|
| Protein sequence | MANSIFMKIT GKIQGLISEG CLSIDSVGNK HISGHEDEIF VYATNYDLSR DRHVNHHPFS
VTKVVDKSTP LLLTSIANNE LLECELRYYR TSASGTQENY MTITLRDASI VNLSNQNPNS
LTHNDMQPFE TLSLRYESIT CQHNIAGTSG YSILTENMY
|
|---|
| |