| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0431 |
|---|
| Symbol | |
|---|
| ID | 8131346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 495271 |
|---|
| End bp | 495777 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644863709 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003016023 |
|---|
| Protein GI | 253686833 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2862] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR00645] conserved hypothetical transmembrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGTT TTATTGAGAA TCTGATGTAT ACCTCGCGCT GGCTGCTTGC CCCTGTTTAT
CTCGGGCTAT CGCTGGGCTT ACTGGCGCTG GCGATCAAGT TTTTCCAGGA GGTGTTCCAC
GTTCTGCCTA ATATCTTTGA TATAGCGGAA GCGGATTTGG TATTGGTGCT GCTGTCACTG
ATCGATATGA CGCTGGTTGG CGGACTGCTG GTGATGGTGA TGTTGTCCGG CTATGAAAAT
TTTGTGTCGG CATTAGATAT CACCGATGGC AGAGAAAAAT TGAACTGGCT CGGTAAGATG
GACTCCGGCT CGCTGAAAAA TAAAGTGGCT GCCTCGATTG TCGCGATCTC GTCGATCCAT
CTGCTGCGTG TGTTCATGGA TGCCCGTAAT ATCCCAGATA ACAAGCTGAT GTGGTATGTG
ATTATCCATT TGACGTTTGT GCTGTCTGCG CTCGTCATGG GCTATCTGGA TCGCATGTCA
CGTTACGAAA AAAGCAAAGC AGCATAA
|
|---|
| Protein sequence | MERFIENLMY TSRWLLAPVY LGLSLGLLAL AIKFFQEVFH VLPNIFDIAE ADLVLVLLSL
IDMTLVGGLL VMVMLSGYEN FVSALDITDG REKLNWLGKM DSGSLKNKVA ASIVAISSIH
LLRVFMDARN IPDNKLMWYV IIHLTFVLSA LVMGYLDRMS RYEKSKAA
|
|---|
| |