| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0425 |
|---|
| Symbol | |
|---|
| ID | 8131340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 487195 |
|---|
| End bp | 488904 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644863703 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003016017 |
|---|
| Protein GI | 253686827 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.703933 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGA ATCCACTTCC TCACCCCTCT CATACCGCTT CAGACGCATC CGCGAAGACG
CCGCTGCTGC ACGTAGACGG CCTGAGCGTC ACGTTTCCCA GCCCTTTCGG CCCCATTCGT
TCGGTTAAGA ACCTCTCTTT TCAGGTAAAT GCTGGTGAAA TTCTGGCGCT GGTCGGCGAG
TCGGGTTCAG GAAAATCTGT CACCGCTCGC ACACTGGTGG GTCTGGCCGG TGAAAACGTT
GACGTACAGG CCAACGCCAT TGAACTCACG CGCCATGACG GCAGCCTGTG TGATTTACGT
TATCTAACCG ATCGCGACTG GCGAACGATT CGCGGCCGTG AAATCGGCTT TGTTTTGCAG
GATGCGCTGG TGTCTCTCGA CCCGCTGCGC AAGATCGGGC AGGAAGTCGC CGAACCGATT
CTGACCCACC ACCTGTTGCC TCGCCAGCAG GTTCCTGCAC GCGTAGCCGA ACTCCTGACG
AAAGCAGGTA TTCCCGACCC AGAGCATCGC GCGGTGCAGT ATCCGCACGA ACTGTCTGGC
GGGCTGCGTC AGCGTGCGCT TATTGCTTCT GCATTAGCAG CAGGCCCACA GTTGCTGATT
GCCGATGAGC CGACTACCGC GCTGGATGCC ACGGTGCAAA AGCAGGTGCT GAAGGTGTTC
ACCGCCTTAG CGCAGGCAGG GCATGGCGTT TTACTGATCA CTCACGATCT TGCCGTTGTC
GCAGAAGTGG CGGATCGCGT CATCGTCATG CAGCAAGGAT CGCTAGTCGA AGGCGGCGAG
GCGCGGCAGA TCCTGTCAGC ACCAACACAT CCCTACACGC GTAAATTACT GGCGGCGATC
CCCACCGCTT CCACACGGGG AAAATGGCTG GCCGGTACTG ACCCGTTACA GAACGGCATG
GCCCCGTCAT CGGCTTCACT GGCAGCGGAT CACGCCAGCA CCGATGACAC CATTGCTCTG
ACAGCGGATC GGATCGCGGT GTCGTTCAAG CGTCCGGACG GCAGCCGGAT GCAGGCCGTC
AATCAGGTTT CTCTCCAGAT CAAGCGCGGT GAAACGCTGG GCATCGTCGG CGAATCCGGT
TCAGGTAAAA CCACGCTGGG CAAAGTCATT CTGGCGCTGC AAAAGCCGGA CAGCGGCGAA
GTTCGACTCG CGGACAATGC CTGGAGCACA TTAACAGAGC GCGAACGTCG ACCACTGCGC
GCACGCATTC AGACGATCAC ACAAGATCCG CTCAGTTCGT TCGATCCGCA ATTTACTGTC
GCACAGATTC TGAACCAGCC ACTGCGTTTG CGCCGCGATC TCAGCGACGA TGAGAAACAG
CGGCGCATTC TGACGCTGCT GGAGTATGTC GGTTTGACGC CCGACCTGCT GAGCCGTCGT
CCCAGAGCGC TGTCAGGCGG GCAGCGACAA CGCGTTTCCA TTGCACAGGC CTTGGCTTCG
GAACCCGAGA TTCTGATCTG CGACGAACCG GTATCAGCGC TGGATGTCAC CACACAGGCG
CAGGTGCTGG ATTTGCTGGT CGCGCTGCAA CGCCAGTTAG GGCTAACGAT GCTGTTCATC
TCCCACGATC TGGGCGTAGT GCAGCACATG AGCCACCGCA TCGCGGTCAT GAAAGACGGG
GATATCGTAG AAACAGGGCC GGTCGAGCAG ATCTTCAATC AGCCGCAACA CCCTTACACG
CGCCTGCTGC TTTCAACGGT GGCGGAGTAG
|
|---|
| Protein sequence | MSLNPLPHPS HTASDASAKT PLLHVDGLSV TFPSPFGPIR SVKNLSFQVN AGEILALVGE
SGSGKSVTAR TLVGLAGENV DVQANAIELT RHDGSLCDLR YLTDRDWRTI RGREIGFVLQ
DALVSLDPLR KIGQEVAEPI LTHHLLPRQQ VPARVAELLT KAGIPDPEHR AVQYPHELSG
GLRQRALIAS ALAAGPQLLI ADEPTTALDA TVQKQVLKVF TALAQAGHGV LLITHDLAVV
AEVADRVIVM QQGSLVEGGE ARQILSAPTH PYTRKLLAAI PTASTRGKWL AGTDPLQNGM
APSSASLAAD HASTDDTIAL TADRIAVSFK RPDGSRMQAV NQVSLQIKRG ETLGIVGESG
SGKTTLGKVI LALQKPDSGE VRLADNAWST LTERERRPLR ARIQTITQDP LSSFDPQFTV
AQILNQPLRL RRDLSDDEKQ RRILTLLEYV GLTPDLLSRR PRALSGGQRQ RVSIAQALAS
EPEILICDEP VSALDVTTQA QVLDLLVALQ RQLGLTMLFI SHDLGVVQHM SHRIAVMKDG
DIVETGPVEQ IFNQPQHPYT RLLLSTVAE
|
|---|
| |